miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 5' -55.7 NC_001798.1 + 153967 0.69 0.816463
Target:  5'- gCG-AG-GACGCggccGGCGCgCUCUCGACCg -3'
miRNA:   3'- -GCaUCaCUGUG----UCGUGgGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 153351 0.68 0.872083
Target:  5'- -----aGGCACGGUccgaugACCgCCUCGGCCg -3'
miRNA:   3'- gcaucaCUGUGUCG------UGGgGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 151846 0.7 0.743253
Target:  5'- gGgcGUGAgGCGGgACCCCCgCG-CCg -3'
miRNA:   3'- gCauCACUgUGUCgUGGGGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 150052 0.71 0.694106
Target:  5'- -----cGGCGCGGCGCCgCCCUCuuGGCCc -3'
miRNA:   3'- gcaucaCUGUGUCGUGG-GGGAG--CUGG- -5'
5134 5' -55.7 NC_001798.1 + 148213 0.69 0.790013
Target:  5'- uGUGGUGuugcgaACGC-GCgaGCCCCCUCGcCCc -3'
miRNA:   3'- gCAUCAC------UGUGuCG--UGGGGGAGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 147531 0.72 0.633538
Target:  5'- uCGU-GUGAgAgAGCGCgCCCCUCGaacGCCg -3'
miRNA:   3'- -GCAuCACUgUgUCGUG-GGGGAGC---UGG- -5'
5134 5' -55.7 NC_001798.1 + 145393 0.69 0.8078
Target:  5'- --gGGcGACGCGgggaaagcGCGCCCCCgccCGGCCg -3'
miRNA:   3'- gcaUCaCUGUGU--------CGUGGGGGa--GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 143226 0.66 0.923008
Target:  5'- uCGUAuccGUGAgcugGCGGCGCCCCaguucgUCGAUCg -3'
miRNA:   3'- -GCAU---CACUg---UGUCGUGGGGg-----AGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 142342 0.66 0.927288
Target:  5'- gGUGG-GACGCccauauguacgcGUACCCCUUUGACUc -3'
miRNA:   3'- gCAUCaCUGUGu-----------CGUGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 142231 0.76 0.430226
Target:  5'- gCGUGGUGAUACAacaCACCCCCaUCGGgCu -3'
miRNA:   3'- -GCAUCACUGUGUc--GUGGGGG-AGCUgG- -5'
5134 5' -55.7 NC_001798.1 + 138581 0.66 0.917446
Target:  5'- --gGGgggGGCACAGCACCaggcaCUCG-CCg -3'
miRNA:   3'- gcaUCa--CUGUGUCGUGGgg---GAGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 137356 0.66 0.909865
Target:  5'- gCGUuc-GACGCcccagcccugguccGGCGCaCCCCUCGGCg -3'
miRNA:   3'- -GCAucaCUGUG--------------UCGUG-GGGGAGCUGg -5'
5134 5' -55.7 NC_001798.1 + 135279 0.7 0.771667
Target:  5'- gCGcUGGUGGC--GGcCGCCCCCUCGgaGCCc -3'
miRNA:   3'- -GC-AUCACUGugUC-GUGGGGGAGC--UGG- -5'
5134 5' -55.7 NC_001798.1 + 135091 0.66 0.933427
Target:  5'- --cGGUcGCGCgguGGCACCCCa-CGGCCa -3'
miRNA:   3'- gcaUCAcUGUG---UCGUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 131549 0.7 0.780906
Target:  5'- -----gGACGCgAGCGCCCCgaCGGCCc -3'
miRNA:   3'- gcaucaCUGUG-UCGUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 130573 1.13 0.001863
Target:  5'- aCGUAGUGACACAGCACCCCCUCGACCa -3'
miRNA:   3'- -GCAUCACUGUGUCGUGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 128837 0.69 0.816463
Target:  5'- -----gGACccCGGCGCCCCCgCGGCCu -3'
miRNA:   3'- gcaucaCUGu-GUCGUGGGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 128299 0.67 0.892875
Target:  5'- ----cUGACGCGccGCGCCCCCcCGuCCg -3'
miRNA:   3'- gcaucACUGUGU--CGUGGGGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 124084 0.66 0.91165
Target:  5'- --aGGcGGCGCcuGCGCCCCgaCGGCCc -3'
miRNA:   3'- gcaUCaCUGUGu-CGUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 122709 0.74 0.513736
Target:  5'- --aGGUGACGCGGCGCUUCCcCGugCu -3'
miRNA:   3'- gcaUCACUGUGUCGUGGGGGaGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.