miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 14171 0.68 0.869892
Target:  5'- uGGGGCAaauugGCcCGCGUGGGGGcagcaCCu -3'
miRNA:   3'- -CCCUGUg----CGaGCGCAUCCCCcaaa-GG- -5'
5135 5' -55.9 NC_001798.1 + 144214 0.68 0.869164
Target:  5'- aGGAgGCGC--GCGguUAGGGGGUUcgcgagcUCCg -3'
miRNA:   3'- cCCUgUGCGagCGC--AUCCCCCAA-------AGG- -5'
5135 5' -55.9 NC_001798.1 + 15199 0.68 0.862522
Target:  5'- gGGGGCugGCgaGCc-GGGGGGagcgUCCg -3'
miRNA:   3'- -CCCUGugCGagCGcaUCCCCCaa--AGG- -5'
5135 5' -55.9 NC_001798.1 + 95782 0.68 0.854951
Target:  5'- uGGAUAUGCUCuagggGCGgggguGGGGGggUCg -3'
miRNA:   3'- cCCUGUGCGAG-----CGCau---CCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 71685 0.68 0.854951
Target:  5'- cGGcGCACGCUCGU--GGGGGaGUUUg- -3'
miRNA:   3'- -CCcUGUGCGAGCGcaUCCCC-CAAAgg -5'
5135 5' -55.9 NC_001798.1 + 57746 0.68 0.854951
Target:  5'- uGGGCGCGCccggCGCagcgAGGaGGGUUgCCg -3'
miRNA:   3'- cCCUGUGCGa---GCGca--UCC-CCCAAaGG- -5'
5135 5' -55.9 NC_001798.1 + 45860 0.68 0.847185
Target:  5'- -cGGCccccCGCUUGCuUGGGGGGgcgUCCg -3'
miRNA:   3'- ccCUGu---GCGAGCGcAUCCCCCaa-AGG- -5'
5135 5' -55.9 NC_001798.1 + 153072 0.68 0.839229
Target:  5'- uGGGGCGgGCggaGCGgcGGGGcGgcgCCg -3'
miRNA:   3'- -CCCUGUgCGag-CGCauCCCC-CaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 41436 0.68 0.839229
Target:  5'- -aGACGCGg--GCGUGGGGGG--UCCa -3'
miRNA:   3'- ccCUGUGCgagCGCAUCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 106053 0.69 0.822778
Target:  5'- cGGGuCACGUgUCGgGgAGGGGGg--CCu -3'
miRNA:   3'- -CCCuGUGCG-AGCgCaUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 15496 0.69 0.822778
Target:  5'- gGGGGCugGUgUG-GUGGGGGGcgUUUUCg -3'
miRNA:   3'- -CCCUGugCGaGCgCAUCCCCC--AAAGG- -5'
5135 5' -55.9 NC_001798.1 + 38351 0.69 0.804782
Target:  5'- aGGGGCGuCGUugucaugUUGCGaGGGGGGggUCg -3'
miRNA:   3'- -CCCUGU-GCG-------AGCGCaUCCCCCaaAGg -5'
5135 5' -55.9 NC_001798.1 + 78939 0.69 0.787922
Target:  5'- uGGGACGaggucugggguCGCUuuggcCGCGUccGGGGGGgcgCCu -3'
miRNA:   3'- -CCCUGU-----------GCGA-----GCGCA--UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 101939 0.7 0.778848
Target:  5'- gGGGAUACGa--GgGUGGGGGGa--CCg -3'
miRNA:   3'- -CCCUGUGCgagCgCAUCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 2964 0.7 0.769647
Target:  5'- cGGGGCGCGUcggcgUGCGgcGGGGcGg--CCg -3'
miRNA:   3'- -CCCUGUGCGa----GCGCauCCCC-CaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 150640 0.7 0.760327
Target:  5'- cGGGGC-UGuCUCGCG--GGGGGcgUCCu -3'
miRNA:   3'- -CCCUGuGC-GAGCGCauCCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 117674 0.7 0.741365
Target:  5'- gGGGACGCGCggccggcggCGUGUAcgcGGGGGa---- -3'
miRNA:   3'- -CCCUGUGCGa--------GCGCAU---CCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 69522 0.7 0.741365
Target:  5'- cGGGGCGuggcccgcgaGCUCGCGcgggcUGGuGGuGGUUUCCa -3'
miRNA:   3'- -CCCUGUg---------CGAGCGC-----AUC-CC-CCAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 9660 0.71 0.712251
Target:  5'- cGGGccGCGCGCggagggCGCGggauGGGGGgcUCUc -3'
miRNA:   3'- -CCC--UGUGCGa-----GCGCau--CCCCCaaAGG- -5'
5135 5' -55.9 NC_001798.1 + 36624 0.71 0.702403
Target:  5'- gGGGGCGCGCg-GCGgccgggcGGGGGcgcgcUUUCCc -3'
miRNA:   3'- -CCCUGUGCGagCGCau-----CCCCC-----AAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.