miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 79883 0.68 0.788473
Target:  5'- gCCGAgcuguacgUCGCCCUcGUCGcCACCaCCCu -3'
miRNA:   3'- aGGCU--------AGCGGGAcUAGUaGUGG-GGGc -5'
5136 3' -57.6 NC_001798.1 + 81825 0.69 0.713179
Target:  5'- cCCGGUCGCCCc-GUCGcCGCUUCCGc -3'
miRNA:   3'- aGGCUAGCGGGacUAGUaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 81858 0.69 0.732574
Target:  5'- cCCGAccagcCGCCCaccccgGAgUCcgCGCCCCCGg -3'
miRNA:   3'- aGGCUa----GCGGGa-----CU-AGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 82322 0.66 0.855164
Target:  5'- cCCGGUUGCCCg---CcgC-CCCCCa -3'
miRNA:   3'- aGGCUAGCGGGacuaGuaGuGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 84198 0.7 0.673662
Target:  5'- gUCUGcucCGCCgUGAUCG-CGCCCCCc -3'
miRNA:   3'- -AGGCua-GCGGgACUAGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 88507 0.66 0.870033
Target:  5'- aCCaGAUccaCGCCCuUGAUgagCAUCuuGCCCCCGc -3'
miRNA:   3'- aGG-CUA---GCGGG-ACUA---GUAG--UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 92144 0.68 0.769369
Target:  5'- cCCG-UCuGCCCccGGUCGUCuugccggGCCCCCGu -3'
miRNA:   3'- aGGCuAG-CGGGa-CUAGUAG-------UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 95586 0.68 0.779446
Target:  5'- -gCGGagGCCCUGGUCAgccagcucggCGCCgCCGg -3'
miRNA:   3'- agGCUagCGGGACUAGUa---------GUGGgGGC- -5'
5136 3' -57.6 NC_001798.1 + 96154 0.67 0.814713
Target:  5'- gCCGGgugacUCGCCaUGGcggCcgCGCCCCCGg -3'
miRNA:   3'- aGGCU-----AGCGGgACUa--GuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 97311 0.66 0.85055
Target:  5'- gUgGA-CGCCCUGAUCAUCGgcggccaggcgacguCgCCCGa -3'
miRNA:   3'- aGgCUaGCGGGACUAGUAGU---------------GgGGGC- -5'
5136 3' -57.6 NC_001798.1 + 101439 0.66 0.877162
Target:  5'- aCCGGUCGCUUUc--CA-CACCCCCu -3'
miRNA:   3'- aGGCUAGCGGGAcuaGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 107649 0.66 0.870033
Target:  5'- gUCGAgaCGCCCUGuugCGccUCACCgCCGg -3'
miRNA:   3'- aGGCUa-GCGGGACua-GU--AGUGGgGGC- -5'
5136 3' -57.6 NC_001798.1 + 110017 0.69 0.722914
Target:  5'- -----aCGCCCUGAUCcgCGCCUUCGu -3'
miRNA:   3'- aggcuaGCGGGACUAGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 110492 0.7 0.66368
Target:  5'- gCCcAUCGCCac---CAUCGCCCCCGg -3'
miRNA:   3'- aGGcUAGCGGgacuaGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 113447 0.67 0.814713
Target:  5'- --gGAUCGCCUgccGUUGUCGCCaCCCGu -3'
miRNA:   3'- aggCUAGCGGGac-UAGUAGUGG-GGGC- -5'
5136 3' -57.6 NC_001798.1 + 116582 0.67 0.814713
Target:  5'- -aUGGUgGUCCcGGagAUCGCCCCCGg -3'
miRNA:   3'- agGCUAgCGGGaCUagUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 116860 0.67 0.806115
Target:  5'- gCCGG-CGUgCUGcUCAUgGCCCCCc -3'
miRNA:   3'- aGGCUaGCGgGACuAGUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 119018 0.69 0.707306
Target:  5'- gCUGGUCGCCCgGggCAUCcgggaccucaaccccGaCCCCCGg -3'
miRNA:   3'- aGGCUAGCGGGaCuaGUAG---------------U-GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 119477 0.66 0.855164
Target:  5'- aUCCGGcgacaUgGCCCcGGUUAUCcgcuACCCCUGa -3'
miRNA:   3'- -AGGCU-----AgCGGGaCUAGUAG----UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 123433 0.66 0.855164
Target:  5'- aCCGGggCGCCCcccccGAcgCGcgCGCCCCCGa -3'
miRNA:   3'- aGGCUa-GCGGGa----CUa-GUa-GUGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.