miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 110017 0.69 0.722914
Target:  5'- -----aCGCCCUGAUCcgCGCCUUCGu -3'
miRNA:   3'- aggcuaGCGGGACUAGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 107649 0.66 0.870033
Target:  5'- gUCGAgaCGCCCUGuugCGccUCACCgCCGg -3'
miRNA:   3'- aGGCUa-GCGGGACua-GU--AGUGGgGGC- -5'
5136 3' -57.6 NC_001798.1 + 101439 0.66 0.877162
Target:  5'- aCCGGUCGCUUUc--CA-CACCCCCu -3'
miRNA:   3'- aGGCUAGCGGGAcuaGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 97311 0.66 0.85055
Target:  5'- gUgGA-CGCCCUGAUCAUCGgcggccaggcgacguCgCCCGa -3'
miRNA:   3'- aGgCUaGCGGGACUAGUAGU---------------GgGGGC- -5'
5136 3' -57.6 NC_001798.1 + 96154 0.67 0.814713
Target:  5'- gCCGGgugacUCGCCaUGGcggCcgCGCCCCCGg -3'
miRNA:   3'- aGGCU-----AGCGGgACUa--GuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 95586 0.68 0.779446
Target:  5'- -gCGGagGCCCUGGUCAgccagcucggCGCCgCCGg -3'
miRNA:   3'- agGCUagCGGGACUAGUa---------GUGGgGGC- -5'
5136 3' -57.6 NC_001798.1 + 92144 0.68 0.769369
Target:  5'- cCCG-UCuGCCCccGGUCGUCuugccggGCCCCCGu -3'
miRNA:   3'- aGGCuAG-CGGGa-CUAGUAG-------UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 88507 0.66 0.870033
Target:  5'- aCCaGAUccaCGCCCuUGAUgagCAUCuuGCCCCCGc -3'
miRNA:   3'- aGG-CUA---GCGGG-ACUA---GUAG--UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 84198 0.7 0.673662
Target:  5'- gUCUGcucCGCCgUGAUCG-CGCCCCCc -3'
miRNA:   3'- -AGGCua-GCGGgACUAGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 82322 0.66 0.855164
Target:  5'- cCCGGUUGCCCg---CcgC-CCCCCa -3'
miRNA:   3'- aGGCUAGCGGGacuaGuaGuGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 81858 0.69 0.732574
Target:  5'- cCCGAccagcCGCCCaccccgGAgUCcgCGCCCCCGg -3'
miRNA:   3'- aGGCUa----GCGGGa-----CU-AGuaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 81825 0.69 0.713179
Target:  5'- cCCGGUCGCCCc-GUCGcCGCUUCCGc -3'
miRNA:   3'- aGGCUAGCGGGacUAGUaGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 79883 0.68 0.788473
Target:  5'- gCCGAgcuguacgUCGCCCUcGUCGcCACCaCCCu -3'
miRNA:   3'- aGGCU--------AGCGGGAcUAGUaGUGG-GGGc -5'
5136 3' -57.6 NC_001798.1 + 79403 0.66 0.855164
Target:  5'- gUCCGcgcccgCGCCCcugcucguUGAUCuucgCGCCCUCGa -3'
miRNA:   3'- -AGGCua----GCGGG--------ACUAGua--GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 77872 0.66 0.847436
Target:  5'- gCCGAggcggucacccUCGCCCUGGauacggccuUCGcguuuaaccccUaCACCCCCGa -3'
miRNA:   3'- aGGCU-----------AGCGGGACU---------AGU-----------A-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 75789 0.67 0.797366
Target:  5'- cCCGAaCaCCCUGu---UCGCCCCCGc -3'
miRNA:   3'- aGGCUaGcGGGACuaguAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 71083 0.7 0.673662
Target:  5'- gCCGcGUCaGCCCgcGGUCGgcgugcgCGCCCCCGg -3'
miRNA:   3'- aGGC-UAG-CGGGa-CUAGUa------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 70122 0.68 0.779446
Target:  5'- cCCGG-CGCCCgccggCAUgACCCCCc -3'
miRNA:   3'- aGGCUaGCGGGacua-GUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 62476 0.68 0.769369
Target:  5'- cCCGGUCGUCCUccucggaGAUacUCACCCCg- -3'
miRNA:   3'- aGGCUAGCGGGA-------CUAguAGUGGGGgc -5'
5136 3' -57.6 NC_001798.1 + 59025 0.68 0.779446
Target:  5'- gCCGGU-GCuCCcGAUCAcgaaCGCCCCCGa -3'
miRNA:   3'- aGGCUAgCG-GGaCUAGUa---GUGGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.