miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 154442 0.66 0.877162
Target:  5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3'
miRNA:   3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 152652 0.68 0.751635
Target:  5'- gCCGGcgCgGCCCUGAguggugccCGCCCCCGg -3'
miRNA:   3'- aGGCUa-G-CGGGACUagua----GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 150880 0.66 0.847436
Target:  5'- uUCCGcggGUCGCCCccg-CAccgcCGCCCCCGc -3'
miRNA:   3'- -AGGC---UAGCGGGacuaGUa---GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 150695 0.66 0.877162
Target:  5'- cCCGcgCG-CCUGcgCG-CGCCCCCc -3'
miRNA:   3'- aGGCuaGCgGGACuaGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 149333 0.68 0.788473
Target:  5'- aCCaGggUGCCCUGGUCAaagagcaugUUGCCCaCCGg -3'
miRNA:   3'- aGG-CuaGCGGGACUAGU---------AGUGGG-GGC- -5'
5136 3' -57.6 NC_001798.1 + 145546 0.66 0.855164
Target:  5'- cCCGGcCGCCCgcGUCGcgccggCGCCCCCu -3'
miRNA:   3'- aGGCUaGCGGGacUAGUa-----GUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 137358 0.68 0.788473
Target:  5'- gUUCGAcgccccaGCCCUGGUCcggcgCACCCCuCGg -3'
miRNA:   3'- -AGGCUag-----CGGGACUAGua---GUGGGG-GC- -5'
5136 3' -57.6 NC_001798.1 + 134997 0.67 0.83952
Target:  5'- cCCGcggugggCGCCagGGUCGUCcuGCCCCCGc -3'
miRNA:   3'- aGGCua-----GCGGgaCUAGUAG--UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 134756 0.66 0.845081
Target:  5'- gCUGGUCGCCCucuuccggcagUGG-CAUaccacgguccacgcCGCCCCCGg -3'
miRNA:   3'- aGGCUAGCGGG-----------ACUaGUA--------------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 133471 0.72 0.563767
Target:  5'- gCCGA-CGCCCUGAgCGgcuGCCCCCc -3'
miRNA:   3'- aGGCUaGCGGGACUaGUag-UGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 129415 1.09 0.002485
Target:  5'- uUCCGAUCGCCCUGAUCAUCACCCCCGu -3'
miRNA:   3'- -AGGCUAGCGGGACUAGUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 126469 0.71 0.612559
Target:  5'- gUCCGAgacggccaugaccUCGCCCc---CGUCGCCCCCc -3'
miRNA:   3'- -AGGCU-------------AGCGGGacuaGUAGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 125348 0.68 0.788473
Target:  5'- -gUGGUCGCCCccaaaGUCA-CGCCCCCu -3'
miRNA:   3'- agGCUAGCGGGac---UAGUaGUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 123433 0.66 0.855164
Target:  5'- aCCGGggCGCCCcccccGAcgCGcgCGCCCCCGa -3'
miRNA:   3'- aGGCUa-GCGGGa----CUa-GUa-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 119477 0.66 0.855164
Target:  5'- aUCCGGcgacaUgGCCCcGGUUAUCcgcuACCCCUGa -3'
miRNA:   3'- -AGGCU-----AgCGGGaCUAGUAG----UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 119018 0.69 0.707306
Target:  5'- gCUGGUCGCCCgGggCAUCcgggaccucaaccccGaCCCCCGg -3'
miRNA:   3'- aGGCUAGCGGGaCuaGUAG---------------U-GGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 116860 0.67 0.806115
Target:  5'- gCCGG-CGUgCUGcUCAUgGCCCCCc -3'
miRNA:   3'- aGGCUaGCGgGACuAGUAgUGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 116582 0.67 0.814713
Target:  5'- -aUGGUgGUCCcGGagAUCGCCCCCGg -3'
miRNA:   3'- agGCUAgCGGGaCUagUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 113447 0.67 0.814713
Target:  5'- --gGAUCGCCUgccGUUGUCGCCaCCCGu -3'
miRNA:   3'- aggCUAGCGGGac-UAGUAGUGG-GGGC- -5'
5136 3' -57.6 NC_001798.1 + 110492 0.7 0.66368
Target:  5'- gCCcAUCGCCac---CAUCGCCCCCGg -3'
miRNA:   3'- aGGcUAGCGGgacuaGUAGUGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.