miRNA display CGI


Results 21 - 40 of 323 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 128759 1.07 0.000369
Target:  5'- cUACCUGGCCCCCGCCCCCCAGACCCCc -3'
miRNA:   3'- -AUGGACCGGGGGCGGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 126278 0.66 0.412683
Target:  5'- cGCCcaagcGGCCCCU-CCCCCCGagacGGCgCCg -3'
miRNA:   3'- aUGGa----CCGGGGGcGGGGGGU----CUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 98 0.66 0.420823
Target:  5'- gGCa--GCCCCgCGCgCCCCCuu-CCCCg -3'
miRNA:   3'- aUGgacCGGGG-GCG-GGGGGucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 69116 0.66 0.420823
Target:  5'- ----aGGCCUCCaggaGCUggCCCCAGGCCUCg -3'
miRNA:   3'- auggaCCGGGGG----CGG--GGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 67552 0.66 0.420823
Target:  5'- cACgUGGUCgCCGCCagggggggcgaCCUCGGGCuCCCg -3'
miRNA:   3'- aUGgACCGGgGGCGG-----------GGGGUCUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 33620 0.66 0.420823
Target:  5'- gUGCCca-CCCCCGCCCCggcgCCc-ACCCCg -3'
miRNA:   3'- -AUGGaccGGGGGCGGGG----GGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 151547 0.66 0.420823
Target:  5'- cACCcacgGGCCCa--CCCCCacaGGAUCCCu -3'
miRNA:   3'- aUGGa---CCGGGggcGGGGGg--UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 26199 0.66 0.418371
Target:  5'- gGCCgGGCCgCCGCCUCgggcgcgggcgacgCCAuGGCgCCCg -3'
miRNA:   3'- aUGGaCCGGgGGCGGGG--------------GGU-CUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 27653 0.66 0.415928
Target:  5'- cGCCUucGcGCCCCCccccaaaaaacaccCCCCCCGGGgguugacuCCCCg -3'
miRNA:   3'- aUGGA--C-CGGGGGc-------------GGGGGGUCU--------GGGG- -5'
5139 3' -67.5 NC_001798.1 + 129690 0.66 0.412683
Target:  5'- cGCCggGGCCCCaguaccggCGCgCaUCGGACCCCc -3'
miRNA:   3'- aUGGa-CCGGGG--------GCGgGgGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 150701 0.66 0.412683
Target:  5'- cGCCU-GCgCgCGCCCCCCGccGGCCgCa -3'
miRNA:   3'- aUGGAcCGgGgGCGGGGGGU--CUGGgG- -5'
5139 3' -67.5 NC_001798.1 + 154436 0.66 0.420823
Target:  5'- gGCa--GCCCCgCGCgCCCCCuu-CCCCg -3'
miRNA:   3'- aUGgacCGGGG-GCG-GGGGGucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 97004 0.66 0.412683
Target:  5'- gGCC-GGCCCgCCGCCCgCCGauaGCUCUu -3'
miRNA:   3'- aUGGaCCGGG-GGCGGGgGGUc--UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 73218 0.66 0.412683
Target:  5'- cGCCUcggcguuucGGCCuUCCGCCggCCCggGGGCCCCc -3'
miRNA:   3'- aUGGA---------CCGG-GGGCGGg-GGG--UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 68938 0.66 0.412683
Target:  5'- aACC-GGUCCagCCGCgCCCCGG-CCCg -3'
miRNA:   3'- aUGGaCCGGG--GGCGgGGGGUCuGGGg -5'
5139 3' -67.5 NC_001798.1 + 29017 0.66 0.412683
Target:  5'- cGCCgcgcgGGCCCggacuCCGCCCCggcgaCC--GCCCCg -3'
miRNA:   3'- aUGGa----CCGGG-----GGCGGGG-----GGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7584 0.66 0.412683
Target:  5'- ----cGcGCCCgCGUCCgacaCCCGGGCCCCa -3'
miRNA:   3'- auggaC-CGGGgGCGGG----GGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7175 0.66 0.412683
Target:  5'- gACCgacgGGCCCCCGCa-CCgGGGCggcgaCCa -3'
miRNA:   3'- aUGGa---CCGGGGGCGggGGgUCUGg----GG- -5'
5139 3' -67.5 NC_001798.1 + 122428 0.66 0.41026
Target:  5'- gGCCUGuGCCgCCGagcgcgucgugcgcCCCCaCCAGcuguCCCCc -3'
miRNA:   3'- aUGGAC-CGGgGGC--------------GGGG-GGUCu---GGGG- -5'
5139 3' -67.5 NC_001798.1 + 31105 0.66 0.404641
Target:  5'- cUGCagUGGacuacgucCCgCCCGCCCCCCGaagagcGCCCCg -3'
miRNA:   3'- -AUGg-ACC--------GG-GGGCGGGGGGUc-----UGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.