miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 150927 0.66 0.953946
Target:  5'- -cGGGGg---GCG-GGCGG-GACGUAg -3'
miRNA:   3'- uaCCCUaaaaUGCuCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 52341 0.66 0.953946
Target:  5'- -cGGGGUcgUggcggccgagcACGAGGCGcugggcgacaccGCGGCGCGc -3'
miRNA:   3'- uaCCCUAaaA-----------UGCUCCGC------------CGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 105691 0.66 0.953946
Target:  5'- -aGGGAgag-GCGAcagacGGgGGCGACaGCGg -3'
miRNA:   3'- uaCCCUaaaaUGCU-----CCgCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 93078 0.66 0.952318
Target:  5'- -aGGGuaagccccaGCGGGGCGcgcGCGACGCc -3'
miRNA:   3'- uaCCCuaaaa----UGCUCCGC---CGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 27552 0.66 0.949804
Target:  5'- -cGGGGgga---GGGGCGGCGccCGCGg -3'
miRNA:   3'- uaCCCUaaaaugCUCCGCCGCu-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 27593 0.66 0.949804
Target:  5'- -gGGGAggg-ACGGGGaaGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaaUGCUCCg-CCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 79949 0.66 0.949804
Target:  5'- cUGGGcugg-GCGuccGGaGCGGCGGCGCc -3'
miRNA:   3'- uACCCuaaaaUGC---UC-CGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 83867 0.66 0.949804
Target:  5'- -cGGGcc----CGAGGCGGCGACc-- -3'
miRNA:   3'- uaCCCuaaaauGCUCCGCCGCUGcgu -5'
5140 5' -54.2 NC_001798.1 + 36483 0.66 0.949804
Target:  5'- -cGGGAggggGCGccGGC-GCGACGCGg -3'
miRNA:   3'- uaCCCUaaaaUGCu-CCGcCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 19059 0.66 0.949804
Target:  5'- uGUGGGuggu--CGGGGCGGCGGaccUGUg -3'
miRNA:   3'- -UACCCuaaaauGCUCCGCCGCU---GCGu -5'
5140 5' -54.2 NC_001798.1 + 42477 0.66 0.94587
Target:  5'- -aGGGAgccgugcacaacgUACGGGGCGGgGAC-CGg -3'
miRNA:   3'- uaCCCUaaa----------AUGCUCCGCCgCUGcGU- -5'
5140 5' -54.2 NC_001798.1 + 69005 0.66 0.945421
Target:  5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3'
miRNA:   3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 43830 0.66 0.945421
Target:  5'- -cGGucucgcgUACGucGGCGGCGAUGCGg -3'
miRNA:   3'- uaCCcuaaa--AUGCu-CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 83967 0.66 0.944969
Target:  5'- -cGGcGAcgg-GCGAGGgccugcuCGGCGGCGCGa -3'
miRNA:   3'- uaCC-CUaaaaUGCUCC-------GCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 31367 0.66 0.940794
Target:  5'- gGUGGGcgaagACGccGCGGCGGCGgAg -3'
miRNA:   3'- -UACCCuaaaaUGCucCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 30532 0.66 0.935921
Target:  5'- -cGGGAg-----GGGGgGGCGACGUg -3'
miRNA:   3'- uaCCCUaaaaugCUCCgCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 135697 0.66 0.935921
Target:  5'- -aGGGAUUUccucuccGCGGGGCcGCGuACGCc -3'
miRNA:   3'- uaCCCUAAAa------UGCUCCGcCGC-UGCGu -5'
5140 5' -54.2 NC_001798.1 + 153809 0.66 0.935921
Target:  5'- -cGGGGg---GC-AGGCGGCGgcagGCGCGg -3'
miRNA:   3'- uaCCCUaaaaUGcUCCGCCGC----UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 124077 0.66 0.930801
Target:  5'- -cGGGAg-----GAGGCGGCGccuGCGCc -3'
miRNA:   3'- uaCCCUaaaaugCUCCGCCGC---UGCGu -5'
5140 5' -54.2 NC_001798.1 + 101843 0.66 0.930801
Target:  5'- -gGGGAg---GCGugggucccGGCGGCGGCGgAg -3'
miRNA:   3'- uaCCCUaaaaUGCu-------CCGCCGCUGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.