Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5140 | 5' | -54.2 | NC_001798.1 | + | 52341 | 0.66 | 0.953946 |
Target: 5'- -cGGGGUcgUggcggccgagcACGAGGCGcugggcgacaccGCGGCGCGc -3' miRNA: 3'- uaCCCUAaaA-----------UGCUCCGC------------CGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 105691 | 0.66 | 0.953946 |
Target: 5'- -aGGGAgag-GCGAcagacGGgGGCGACaGCGg -3' miRNA: 3'- uaCCCUaaaaUGCU-----CCgCCGCUG-CGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 150927 | 0.66 | 0.953946 |
Target: 5'- -cGGGGg---GCG-GGCGG-GACGUAg -3' miRNA: 3'- uaCCCUaaaaUGCuCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 93078 | 0.66 | 0.952318 |
Target: 5'- -aGGGuaagccccaGCGGGGCGcgcGCGACGCc -3' miRNA: 3'- uaCCCuaaaa----UGCUCCGC---CGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36483 | 0.66 | 0.949804 |
Target: 5'- -cGGGAggggGCGccGGC-GCGACGCGg -3' miRNA: 3'- uaCCCUaaaaUGCu-CCGcCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 83867 | 0.66 | 0.949804 |
Target: 5'- -cGGGcc----CGAGGCGGCGACc-- -3' miRNA: 3'- uaCCCuaaaauGCUCCGCCGCUGcgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 79949 | 0.66 | 0.949804 |
Target: 5'- cUGGGcugg-GCGuccGGaGCGGCGGCGCc -3' miRNA: 3'- uACCCuaaaaUGC---UC-CGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 27593 | 0.66 | 0.949804 |
Target: 5'- -gGGGAggg-ACGGGGaaGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaaUGCUCCg-CCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 27552 | 0.66 | 0.949804 |
Target: 5'- -cGGGGgga---GGGGCGGCGccCGCGg -3' miRNA: 3'- uaCCCUaaaaugCUCCGCCGCu-GCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 19059 | 0.66 | 0.949804 |
Target: 5'- uGUGGGuggu--CGGGGCGGCGGaccUGUg -3' miRNA: 3'- -UACCCuaaaauGCUCCGCCGCU---GCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 42477 | 0.66 | 0.94587 |
Target: 5'- -aGGGAgccgugcacaacgUACGGGGCGGgGAC-CGg -3' miRNA: 3'- uaCCCUaaa----------AUGCUCCGCCgCUGcGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 69005 | 0.66 | 0.945421 |
Target: 5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3' miRNA: 3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 43830 | 0.66 | 0.945421 |
Target: 5'- -cGGucucgcgUACGucGGCGGCGAUGCGg -3' miRNA: 3'- uaCCcuaaa--AUGCu-CCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 83967 | 0.66 | 0.944969 |
Target: 5'- -cGGcGAcgg-GCGAGGgccugcuCGGCGGCGCGa -3' miRNA: 3'- uaCC-CUaaaaUGCUCC-------GCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 31367 | 0.66 | 0.940794 |
Target: 5'- gGUGGGcgaagACGccGCGGCGGCGgAg -3' miRNA: 3'- -UACCCuaaaaUGCucCGCCGCUGCgU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 153809 | 0.66 | 0.935921 |
Target: 5'- -cGGGGg---GC-AGGCGGCGgcagGCGCGg -3' miRNA: 3'- uaCCCUaaaaUGcUCCGCCGC----UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 135697 | 0.66 | 0.935921 |
Target: 5'- -aGGGAUUUccucuccGCGGGGCcGCGuACGCc -3' miRNA: 3'- uaCCCUAAAa------UGCUCCGcCGC-UGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 30532 | 0.66 | 0.935921 |
Target: 5'- -cGGGAg-----GGGGgGGCGACGUg -3' miRNA: 3'- uaCCCUaaaaugCUCCgCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 32955 | 0.66 | 0.930801 |
Target: 5'- gGUGGGAg--UGgGGGGgGGgGACGg- -3' miRNA: 3'- -UACCCUaaaAUgCUCCgCCgCUGCgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 124077 | 0.66 | 0.930801 |
Target: 5'- -cGGGAg-----GAGGCGGCGccuGCGCc -3' miRNA: 3'- uaCCCUaaaaugCUCCGCCGC---UGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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