Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5140 | 5' | -54.2 | NC_001798.1 | + | 79949 | 0.66 | 0.949804 |
Target: 5'- cUGGGcugg-GCGuccGGaGCGGCGGCGCc -3' miRNA: 3'- uACCCuaaaaUGC---UC-CGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 27593 | 0.66 | 0.949804 |
Target: 5'- -gGGGAggg-ACGGGGaaGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaaUGCUCCg-CCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 27552 | 0.66 | 0.949804 |
Target: 5'- -cGGGGgga---GGGGCGGCGccCGCGg -3' miRNA: 3'- uaCCCUaaaaugCUCCGCCGCu-GCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 19059 | 0.66 | 0.949804 |
Target: 5'- uGUGGGuggu--CGGGGCGGCGGaccUGUg -3' miRNA: 3'- -UACCCuaaaauGCUCCGCCGCU---GCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 42477 | 0.66 | 0.94587 |
Target: 5'- -aGGGAgccgugcacaacgUACGGGGCGGgGAC-CGg -3' miRNA: 3'- uaCCCUaaa----------AUGCUCCGCCgCUGcGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 69005 | 0.66 | 0.945421 |
Target: 5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3' miRNA: 3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 152044 | 0.67 | 0.919813 |
Target: 5'- -aGGGu-----CGGGG-GGCGGCGCAc -3' miRNA: 3'- uaCCCuaaaauGCUCCgCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 96697 | 0.67 | 0.913947 |
Target: 5'- -cGGGAgUUUAUGGuGGCGGCGGUGgGg -3' miRNA: 3'- uaCCCUaAAAUGCU-CCGCCGCUGCgU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 9120 | 0.67 | 0.913947 |
Target: 5'- -gGGGAgccgccGCGAGGUGGUcugcggcacgcgGGCGCGg -3' miRNA: 3'- uaCCCUaaaa--UGCUCCGCCG------------CUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 26507 | 0.67 | 0.909693 |
Target: 5'- -gGGGAcggugcuggccgcgGCG-GGCGGCGGCGUg -3' miRNA: 3'- uaCCCUaaaa----------UGCuCCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36040 | 0.67 | 0.907834 |
Target: 5'- -gGGGGUg--GCGGcGGUGGuCGGCGUg -3' miRNA: 3'- uaCCCUAaaaUGCU-CCGCC-GCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 150569 | 0.67 | 0.907834 |
Target: 5'- -cGGGGccc-GCGGGGCGGCG-CGgAg -3' miRNA: 3'- uaCCCUaaaaUGCUCCGCCGCuGCgU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36293 | 0.67 | 0.919813 |
Target: 5'- -gGGGGUgccgUGgGuguGGCGGCGGgGCGc -3' miRNA: 3'- uaCCCUAaa--AUgCu--CCGCCGCUgCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 116331 | 0.67 | 0.919813 |
Target: 5'- -cGGGGgggcACGAGcccgucuacGCGGCGGCGUg -3' miRNA: 3'- uaCCCUaaaaUGCUC---------CGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 149928 | 0.67 | 0.919813 |
Target: 5'- -gGaGGAgg--AgGAGGCGGCGGCGa- -3' miRNA: 3'- uaC-CCUaaaaUgCUCCGCCGCUGCgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 8792 | 0.67 | 0.925431 |
Target: 5'- -cGGGAcgg-GCGAGGCcGCGGgGUAa -3' miRNA: 3'- uaCCCUaaaaUGCUCCGcCGCUgCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 64723 | 0.67 | 0.925431 |
Target: 5'- cUGGGc-----CGAGGCGGCGgugggcaugaGCGCGa -3' miRNA: 3'- uACCCuaaaauGCUCCGCCGC----------UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 150419 | 0.67 | 0.925431 |
Target: 5'- -cGGGGgc------GGCGGCGGCGCGg -3' miRNA: 3'- uaCCCUaaaaugcuCCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 153071 | 0.67 | 0.925431 |
Target: 5'- cUGGGGcgg-GCGGaGCGGCGGgGCGg -3' miRNA: 3'- uACCCUaaaaUGCUcCGCCGCUgCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 88325 | 0.67 | 0.907834 |
Target: 5'- gAUGGGcgUcUACGAGGaCGGCcccgaACGCc -3' miRNA: 3'- -UACCCuaAaAUGCUCC-GCCGc----UGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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