miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 153951 0.67 0.82632
Target:  5'- aGCCAGCGCCgcaggagcgaggaCGCGGCC-GGCGc--- -3'
miRNA:   3'- cUGGUUGUGG-------------GUGCCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 149982 0.67 0.809966
Target:  5'- gGGCgCGGCGCCCGCGgacGCCggGGCGa--- -3'
miRNA:   3'- -CUG-GUUGUGGGUGC---CGGa-CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 141032 0.73 0.466412
Target:  5'- -uCCAGCGCCC-CGGCCUGGaCGc--- -3'
miRNA:   3'- cuGGUUGUGGGuGCCGGACC-GCauac -5'
5141 3' -56.9 NC_001798.1 + 139331 0.74 0.438931
Target:  5'- cGCCGGCGCCCgcgcgcgcuguGCGGCCaUGGCGg--- -3'
miRNA:   3'- cUGGUUGUGGG-----------UGCCGG-ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 138763 0.71 0.583808
Target:  5'- nGGCCAGCugCCGgGGCa--GCGUGUGc -3'
miRNA:   3'- -CUGGUUGugGGUgCCGgacCGCAUAC- -5'
5141 3' -56.9 NC_001798.1 + 138732 0.72 0.54362
Target:  5'- gGGCCGGCGCgcuCCGCGGCCccGGCGaccGUGg -3'
miRNA:   3'- -CUGGUUGUG---GGUGCCGGa-CCGCa--UAC- -5'
5141 3' -56.9 NC_001798.1 + 136854 0.7 0.675532
Target:  5'- cGCCGACACCUugacgaacagcgAgGGCgUGGCGUGg- -3'
miRNA:   3'- cUGGUUGUGGG------------UgCCGgACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 136033 0.67 0.801122
Target:  5'- gGAUCugUACCCGCGGCCcuUGGUGc--- -3'
miRNA:   3'- -CUGGuuGUGGGUGCCGG--ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 134603 0.68 0.754791
Target:  5'- cGACCAggaaggaggGCGCCUucGCGGaCCUGGUcgagGUGUGc -3'
miRNA:   3'- -CUGGU---------UGUGGG--UGCC-GGACCG----CAUAC- -5'
5141 3' -56.9 NC_001798.1 + 134454 0.68 0.782986
Target:  5'- cGCCgAGCACCC-CGGCgcgcggUUGGCGUGg- -3'
miRNA:   3'- cUGG-UUGUGGGuGCCG------GACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 131552 0.67 0.801122
Target:  5'- cGCgAGCGCCCcgACGGCCcgGuGCGUAa- -3'
miRNA:   3'- cUGgUUGUGGG--UGCCGGa-C-CGCAUac -5'
5141 3' -56.9 NC_001798.1 + 130381 0.66 0.866938
Target:  5'- cGCguGCACCgaagCACGGCCaUGGCGa--- -3'
miRNA:   3'- cUGguUGUGG----GUGCCGG-ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 130029 0.67 0.827164
Target:  5'- cACCGGCuccCCCGCGGaCCuUGGCGcAUa -3'
miRNA:   3'- cUGGUUGu--GGGUGCC-GG-ACCGCaUAc -5'
5141 3' -56.9 NC_001798.1 + 129341 0.78 0.262936
Target:  5'- cGGCCGcggaGCGCCCGCcgGGCCUGGCGg--- -3'
miRNA:   3'- -CUGGU----UGUGGGUG--CCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 128841 0.7 0.655184
Target:  5'- -cCCGGCGCCCccGCGGCCUccGCGUAc- -3'
miRNA:   3'- cuGGUUGUGGG--UGCCGGAc-CGCAUac -5'
5141 3' -56.9 NC_001798.1 + 128280 0.66 0.866938
Target:  5'- cGGCCGGCACCuCugGcGCCUGacGCGc--- -3'
miRNA:   3'- -CUGGUUGUGG-GugC-CGGAC--CGCauac -5'
5141 3' -56.9 NC_001798.1 + 127478 1.08 0.002426
Target:  5'- aGACCAACACCCACGGCCUGGCGUAUGa -3'
miRNA:   3'- -CUGGUUGUGGGUGCCGGACCGCAUAC- -5'
5141 3' -56.9 NC_001798.1 + 126212 0.67 0.801122
Target:  5'- cACCGACGCuCCuucaaGGCCUGGCu---- -3'
miRNA:   3'- cUGGUUGUG-GGug---CCGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 125462 0.7 0.634763
Target:  5'- -cCCGACGCCCgggaccACGGUCUGGUGg--- -3'
miRNA:   3'- cuGGUUGUGGG------UGCCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 124729 0.68 0.764309
Target:  5'- aACCAGC-CCCGCaGGCa-GGCGUGa- -3'
miRNA:   3'- cUGGUUGuGGGUG-CCGgaCCGCAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.