miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 44402 0.68 0.782064
Target:  5'- gGGCCGggaGCAaugggguCCCGCGGCCcagGGCGUc-- -3'
miRNA:   3'- -CUGGU---UGU-------GGGUGCCGGa--CCGCAuac -5'
5141 3' -56.9 NC_001798.1 + 79367 0.68 0.77371
Target:  5'- cGCCAGgGCCgGCGGCCagacgGGCGc--- -3'
miRNA:   3'- cUGGUUgUGGgUGCCGGa----CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 3537 0.68 0.77371
Target:  5'- aGCCGAagcgGCCCGCcGCCaUGGCGUAc- -3'
miRNA:   3'- cUGGUUg---UGGGUGcCGG-ACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 4967 0.68 0.764309
Target:  5'- cGACCucGGC-CCCGCGGCCcUGcGCGUc-- -3'
miRNA:   3'- -CUGG--UUGuGGGUGCCGG-AC-CGCAuac -5'
5141 3' -56.9 NC_001798.1 + 124729 0.68 0.764309
Target:  5'- aACCAGC-CCCGCaGGCa-GGCGUGa- -3'
miRNA:   3'- cUGGUUGuGGGUG-CCGgaCCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 134603 0.68 0.754791
Target:  5'- cGACCAggaaggaggGCGCCUucGCGGaCCUGGUcgagGUGUGc -3'
miRNA:   3'- -CUGGU---------UGUGGG--UGCC-GGACCG----CAUAC- -5'
5141 3' -56.9 NC_001798.1 + 76346 0.68 0.745165
Target:  5'- gGGCCAGCcccuagauGCCCccgaggaccugGCGGCCUGGCu---- -3'
miRNA:   3'- -CUGGUUG--------UGGG-----------UGCCGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 3108 0.69 0.73544
Target:  5'- cGGCCAgGCACuCCACGGCCacGCGg--- -3'
miRNA:   3'- -CUGGU-UGUG-GGUGCCGGacCGCauac -5'
5141 3' -56.9 NC_001798.1 + 58110 0.69 0.73544
Target:  5'- cGGCC---GCCCAgGGCCcGGCGUcUGg -3'
miRNA:   3'- -CUGGuugUGGGUgCCGGaCCGCAuAC- -5'
5141 3' -56.9 NC_001798.1 + 31738 0.69 0.731524
Target:  5'- aGACCGACACCCAagcacagagucugGGCCgGGCa---- -3'
miRNA:   3'- -CUGGUUGUGGGUg------------CCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 49303 0.69 0.725626
Target:  5'- cGACauucGCGCCCACGGCgacgUGGCGUu-- -3'
miRNA:   3'- -CUGgu--UGUGGGUGCCGg---ACCGCAuac -5'
5141 3' -56.9 NC_001798.1 + 112033 0.69 0.725626
Target:  5'- cACCAGCACCCcCGGgCUGGUu---- -3'
miRNA:   3'- cUGGUUGUGGGuGCCgGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 48355 0.69 0.715731
Target:  5'- cGACCGcggcCGCCCGgGGCCgccccgcggGGCGUGc- -3'
miRNA:   3'- -CUGGUu---GUGGGUgCCGGa--------CCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 34044 0.69 0.685657
Target:  5'- cGCC-ACACCCACGGCUgUGGCc---- -3'
miRNA:   3'- cUGGuUGUGGGUGCCGG-ACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 72141 0.69 0.685657
Target:  5'- aACCGGcCACCCG-GGCC-GGCGUcgGg -3'
miRNA:   3'- cUGGUU-GUGGGUgCCGGaCCGCAuaC- -5'
5141 3' -56.9 NC_001798.1 + 79271 0.7 0.675532
Target:  5'- cGACgCGGCGgCCGCGGaCCUGGCcccGUGg -3'
miRNA:   3'- -CUG-GUUGUgGGUGCC-GGACCGca-UAC- -5'
5141 3' -56.9 NC_001798.1 + 37152 0.7 0.675532
Target:  5'- uGGCCGcucGCGCCgCGCcGCCUGGCGg--- -3'
miRNA:   3'- -CUGGU---UGUGG-GUGcCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 136854 0.7 0.675532
Target:  5'- cGCCGACACCUugacgaacagcgAgGGCgUGGCGUGg- -3'
miRNA:   3'- cUGGUUGUGGG------------UgCCGgACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 93981 0.7 0.675532
Target:  5'- gGACCAGgcggUGCCCACGGCcCUGGgGa--- -3'
miRNA:   3'- -CUGGUU----GUGGGUGCCG-GACCgCauac -5'
5141 3' -56.9 NC_001798.1 + 17872 0.7 0.665371
Target:  5'- gGGCUuGCACCCGCGGCUgaUGGCc---- -3'
miRNA:   3'- -CUGGuUGUGGGUGCCGG--ACCGcauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.