miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 89129 0.69 0.71404
Target:  5'- cCGGuCCGCCUCCaGguGCGCGACGgccUCGg -3'
miRNA:   3'- -GUU-GGCGGGGGaCuuCGUGCUGC---AGC- -5'
5142 3' -57.3 NC_001798.1 + 29533 0.69 0.723803
Target:  5'- --uCCGCCCCCgccGggGCGCG-CGg-- -3'
miRNA:   3'- guuGGCGGGGGa--CuuCGUGCuGCagc -5'
5142 3' -57.3 NC_001798.1 + 150901 0.69 0.723803
Target:  5'- -cGCCGCCCCCgcgccGggGCGCucuucggggGGCGggCGg -3'
miRNA:   3'- guUGGCGGGGGa----CuuCGUG---------CUGCa-GC- -5'
5142 3' -57.3 NC_001798.1 + 138158 0.69 0.733489
Target:  5'- ---gCGCCCCCggguccugGggGCGCGACccgCGg -3'
miRNA:   3'- guugGCGGGGGa-------CuuCGUGCUGca-GC- -5'
5142 3' -57.3 NC_001798.1 + 102400 0.69 0.733489
Target:  5'- gCGAUgGCCCCCaccAGCGCGGCGaUCu -3'
miRNA:   3'- -GUUGgCGGGGGacuUCGUGCUGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 3833 0.69 0.74309
Target:  5'- uCGGgCGCCCCCcaGAGGCcgggGCGGCuGUCGc -3'
miRNA:   3'- -GUUgGCGGGGGa-CUUCG----UGCUG-CAGC- -5'
5142 3' -57.3 NC_001798.1 + 44424 0.69 0.74309
Target:  5'- gCGGCCcaggGCgUCUUGGAGCacgGCGACGUCGu -3'
miRNA:   3'- -GUUGG----CGgGGGACUUCG---UGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 81784 0.69 0.74309
Target:  5'- --uCCGCCCCCcccGAGGggUGGCGUCc -3'
miRNA:   3'- guuGGCGGGGGa--CUUCguGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 112584 0.69 0.74309
Target:  5'- gAACUcCCCCCacugUGGAuCGCGGCGUCGg -3'
miRNA:   3'- gUUGGcGGGGG----ACUUcGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 23825 0.69 0.74309
Target:  5'- --cCCGCCCCC-GggGCGCGugcUGUaCGg -3'
miRNA:   3'- guuGGCGGGGGaCuuCGUGCu--GCA-GC- -5'
5142 3' -57.3 NC_001798.1 + 98759 0.68 0.752598
Target:  5'- --cCCGCCCCCcGAcGCcaacGCGAcCGUCGc -3'
miRNA:   3'- guuGGCGGGGGaCUuCG----UGCU-GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 142483 0.68 0.762002
Target:  5'- gGACgGCCCCCgagGcGGCGCGGgGgugCGa -3'
miRNA:   3'- gUUGgCGGGGGa--CuUCGUGCUgCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 21944 0.68 0.762002
Target:  5'- --cCCGCCCCCUuugggcGGAGCGCgggauGACG-CGg -3'
miRNA:   3'- guuGGCGGGGGA------CUUCGUG-----CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 147213 0.68 0.762002
Target:  5'- cCGGCCcggGCCCCCggcGGAGCGCGGgGgcccCGg -3'
miRNA:   3'- -GUUGG---CGGGGGa--CUUCGUGCUgCa---GC- -5'
5142 3' -57.3 NC_001798.1 + 85001 0.68 0.762002
Target:  5'- gCGugCGCCCCgCUcGAccGGCcaugGCGACGUCc -3'
miRNA:   3'- -GUugGCGGGG-GA-CU--UCG----UGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 94448 0.68 0.771295
Target:  5'- aGACgGCCCCCgccGAgagcagcuucgAGgGCGACGUUGc -3'
miRNA:   3'- gUUGgCGGGGGa--CU-----------UCgUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 22322 0.68 0.771295
Target:  5'- gGGCCGCCgCCacggacgcgGAcGCGCGgGCGUCGg -3'
miRNA:   3'- gUUGGCGGgGGa--------CUuCGUGC-UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 135288 0.68 0.771295
Target:  5'- gCGGCCGCCCCCUcGGAGccCugGGCc-CGg -3'
miRNA:   3'- -GUUGGCGGGGGA-CUUC--GugCUGcaGC- -5'
5142 3' -57.3 NC_001798.1 + 91631 0.68 0.771295
Target:  5'- cCGGCCGCCCggguGAGCGUGACGUCa -3'
miRNA:   3'- -GUUGGCGGGggacUUCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 52942 0.68 0.771295
Target:  5'- aGACCGCCgCCCUccgGgcGCACG-UGUCc -3'
miRNA:   3'- gUUGGCGG-GGGA---CuuCGUGCuGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.