miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 23135 0.67 0.802688
Target:  5'- gCcgCGGaCCCCCuccaUGCGCGCCGAUu -3'
miRNA:   3'- -GuaGUC-GGGGGuuccACGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 96088 0.67 0.802688
Target:  5'- gCAUCAGUCCgCGcGGgGCGCGCCucuGACc -3'
miRNA:   3'- -GUAGUCGGGgGUuCCaCGUGUGG---CUG- -5'
5143 3' -57.6 NC_001798.1 + 56755 0.67 0.800015
Target:  5'- aCGUCAGCUggCAggugaAGGUGCGCggggggcccuggccGCCGACg -3'
miRNA:   3'- -GUAGUCGGggGU-----UCCACGUG--------------UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 141133 0.67 0.793724
Target:  5'- gCAUCGGCaaCC-AGG-GC-CGCCGACa -3'
miRNA:   3'- -GUAGUCGggGGuUCCaCGuGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 23872 0.67 0.793724
Target:  5'- --cCGGCCUCUggGGgGCGC-CCGAg -3'
miRNA:   3'- guaGUCGGGGGuuCCaCGUGuGGCUg -5'
5143 3' -57.6 NC_001798.1 + 58749 0.67 0.791006
Target:  5'- uCGUCAGCccgccgacgacaacCCCCAGGGU----GCCGACa -3'
miRNA:   3'- -GUAGUCG--------------GGGGUUCCAcgugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 25233 0.67 0.784615
Target:  5'- --cCGGCCCgCCGAGG-GC-C-CCGACc -3'
miRNA:   3'- guaGUCGGG-GGUUCCaCGuGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 38719 0.67 0.784615
Target:  5'- ---aGGCCCCCGGGauguaaaaGUGCAucgucuCGCCGGCc -3'
miRNA:   3'- guagUCGGGGGUUC--------CACGU------GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 62438 0.67 0.784615
Target:  5'- --cCAGCCCCCGGacgucgccGGUGgGcCGCgCGACg -3'
miRNA:   3'- guaGUCGGGGGUU--------CCACgU-GUG-GCUG- -5'
5143 3' -57.6 NC_001798.1 + 77301 0.67 0.784615
Target:  5'- uGUCcuUCCUCGcGGUGCugGCCGAUa -3'
miRNA:   3'- gUAGucGGGGGUuCCACGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 87280 0.67 0.784615
Target:  5'- ---uGGCCUCCcuGGUcguGCugGCCGACc -3'
miRNA:   3'- guagUCGGGGGuuCCA---CGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 32300 0.67 0.77537
Target:  5'- -cUCGGCCCCCGcGcUGCuGCGCCG-Cg -3'
miRNA:   3'- guAGUCGGGGGUuCcACG-UGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 93083 0.67 0.765997
Target:  5'- ---aAGCCCCagcGGG-GCGCGCgCGACg -3'
miRNA:   3'- guagUCGGGGgu-UCCaCGUGUG-GCUG- -5'
5143 3' -57.6 NC_001798.1 + 84597 0.67 0.765997
Target:  5'- aGUCGGUCCCgGugccGGUGCccCGCCGAa -3'
miRNA:   3'- gUAGUCGGGGgUu---CCACGu-GUGGCUg -5'
5143 3' -57.6 NC_001798.1 + 69315 0.67 0.765997
Target:  5'- gGUCAGCCCUCcc---GCGCGCCGGg -3'
miRNA:   3'- gUAGUCGGGGGuuccaCGUGUGGCUg -5'
5143 3' -57.6 NC_001798.1 + 135016 0.67 0.756506
Target:  5'- uCGUCcuGCCCCCGcGG-GCAUgGCCGGCc -3'
miRNA:   3'- -GUAGu-CGGGGGUuCCaCGUG-UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 149240 0.67 0.756506
Target:  5'- ---uGGCCCgCGGGG-GCGuCGCCGGCc -3'
miRNA:   3'- guagUCGGGgGUUCCaCGU-GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 102992 0.67 0.756506
Target:  5'- ----cGCCUCCAcgccgggggcccAGGUGCGC-CCGGCc -3'
miRNA:   3'- guaguCGGGGGU------------UCCACGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 84631 0.68 0.746905
Target:  5'- gCGUCAGCCCCgCAGgaucuGGUGCAgguccaggaACCGGu -3'
miRNA:   3'- -GUAGUCGGGG-GUU-----CCACGUg--------UGGCUg -5'
5143 3' -57.6 NC_001798.1 + 109367 0.68 0.746905
Target:  5'- ---uGGCCgCCCGGGGagcagcgggcUGCGCgGCCGACu -3'
miRNA:   3'- guagUCGG-GGGUUCC----------ACGUG-UGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.