Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5143 | 3' | -57.6 | NC_001798.1 | + | 74196 | 0.7 | 0.626472 |
Target: 5'- cCAUCGGCCCCCuGGGcaugggGCucUACCGGg -3' miRNA: 3'- -GUAGUCGGGGGuUCCa-----CGu-GUGGCUg -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 23568 | 0.7 | 0.626472 |
Target: 5'- gCGagGGCCCCgGGGGcgGCGCcCCGGCc -3' miRNA: 3'- -GUagUCGGGGgUUCCa-CGUGuGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 142485 | 0.7 | 0.626472 |
Target: 5'- --aCGGCCCCCGAGGcgGCGCGggggugCGAUa -3' miRNA: 3'- guaGUCGGGGGUUCCa-CGUGUg-----GCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 134154 | 0.69 | 0.636682 |
Target: 5'- -cUCGGCCCCCGGGGccgucgcgGC-CGCCcGCg -3' miRNA: 3'- guAGUCGGGGGUUCCa-------CGuGUGGcUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 112763 | 0.69 | 0.64689 |
Target: 5'- uCAUCAGCCCgCGGGGaggGCggacGCACgGAUg -3' miRNA: 3'- -GUAGUCGGGgGUUCCa--CG----UGUGgCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 148672 | 0.69 | 0.657085 |
Target: 5'- --cCA-CCCCCAGGGU-CugGCCGGCc -3' miRNA: 3'- guaGUcGGGGGUUCCAcGugUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 61881 | 0.69 | 0.666244 |
Target: 5'- --gCGGCCCCCucGGGcGCGCccucgaaGCCGGCc -3' miRNA: 3'- guaGUCGGGGGu-UCCaCGUG-------UGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 93346 | 0.69 | 0.66726 |
Target: 5'- -uUCGGCCCuccaccugaCCGAGGUGgACgacgccggGCCGGCg -3' miRNA: 3'- guAGUCGGG---------GGUUCCACgUG--------UGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 108023 | 0.69 | 0.66726 |
Target: 5'- --aUAGCCUCCGAGGUGCGgaGCCu-- -3' miRNA: 3'- guaGUCGGGGGUUCCACGUg-UGGcug -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 79503 | 0.69 | 0.677408 |
Target: 5'- ----cGCCgCCGGGGcgaggcguaucUGCGCGCCGGCg -3' miRNA: 3'- guaguCGGgGGUUCC-----------ACGUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 25810 | 0.69 | 0.677408 |
Target: 5'- ---gAGUUCCUggGGcUGCugGCCGGCg -3' miRNA: 3'- guagUCGGGGGuuCC-ACGugUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 143303 | 0.69 | 0.687518 |
Target: 5'- cCGUCcGCCCCCGgcGGGUcGCcggccACGCuCGACg -3' miRNA: 3'- -GUAGuCGGGGGU--UCCA-CG-----UGUG-GCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 21732 | 0.68 | 0.696578 |
Target: 5'- gGUguGCCCCU--GGUGCggcggcgaccgggACGCCGGCc -3' miRNA: 3'- gUAguCGGGGGuuCCACG-------------UGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 34974 | 0.68 | 0.696578 |
Target: 5'- --gCGGCCgCCGAGGUGCGgGggccccuCCGGCc -3' miRNA: 3'- guaGUCGGgGGUUCCACGUgU-------GGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 146629 | 0.68 | 0.697583 |
Target: 5'- gCAUUAgGCCCCCGcGG-GCAU-CCGGCg -3' miRNA: 3'- -GUAGU-CGGGGGUuCCaCGUGuGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 72274 | 0.68 | 0.707593 |
Target: 5'- --cCAGCCuCCCGAGGUGgGCAgCaGCc -3' miRNA: 3'- guaGUCGG-GGGUUCCACgUGUgGcUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 25275 | 0.68 | 0.707593 |
Target: 5'- --cCAGCCgCCGGGGcccagccaCACGCCGGCg -3' miRNA: 3'- guaGUCGGgGGUUCCac------GUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 53412 | 0.68 | 0.707593 |
Target: 5'- gCGUCGGCCgCCAAGcagGCGC-UCGGCg -3' miRNA: 3'- -GUAGUCGGgGGUUCca-CGUGuGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 56617 | 0.68 | 0.707593 |
Target: 5'- aCGUCA-CCCCCucGG-GCACacaGCCGGCc -3' miRNA: 3'- -GUAGUcGGGGGuuCCaCGUG---UGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 87471 | 0.68 | 0.707593 |
Target: 5'- aCGUCGGCCCaCC----UGCACuACCGGCu -3' miRNA: 3'- -GUAGUCGGG-GGuuccACGUG-UGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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