miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 126192 1.1 0.001572
Target:  5'- aCAUCAGCCCCCAAGGUGCACACCGACg -3'
miRNA:   3'- -GUAGUCGGGGGUUCCACGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 147035 0.78 0.240186
Target:  5'- -cUUGGCCgCCGAGGUGCGCcCCGGCc -3'
miRNA:   3'- guAGUCGGgGGUUCCACGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 52630 0.76 0.318358
Target:  5'- --aCGGCCCCCGAGGUGgGCACguACa -3'
miRNA:   3'- guaGUCGGGGGUUCCACgUGUGgcUG- -5'
5143 3' -57.6 NC_001798.1 + 61190 0.74 0.39701
Target:  5'- gGUCGGCCUgCAccGGcGCGCGCCGGCg -3'
miRNA:   3'- gUAGUCGGGgGUu-CCaCGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 85030 0.73 0.422924
Target:  5'- aCGUCcGCCCCgGGGGUGCcgucgaGCGCCGcCg -3'
miRNA:   3'- -GUAGuCGGGGgUUCCACG------UGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 103375 0.72 0.468274
Target:  5'- --aCGGCCCCCGAGGgucGUugACCacGGCg -3'
miRNA:   3'- guaGUCGGGGGUUCCa--CGugUGG--CUG- -5'
5143 3' -57.6 NC_001798.1 + 18597 0.72 0.477643
Target:  5'- --gCAGCCCCCccGGGUccGCGCGCCGuCc -3'
miRNA:   3'- guaGUCGGGGGu-UCCA--CGUGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 25925 0.72 0.477643
Target:  5'- ---uGGCCUgCGAGGUGCugccCGCCGGCa -3'
miRNA:   3'- guagUCGGGgGUUCCACGu---GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 54488 0.72 0.496652
Target:  5'- cCcgCGGCCCCUcgGAGGUGCAggcgcCACCG-Cg -3'
miRNA:   3'- -GuaGUCGGGGG--UUCCACGU-----GUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 135538 0.72 0.515995
Target:  5'- ---gGGCCCUCGAGGcguccgUGCGCGCCGuACu -3'
miRNA:   3'- guagUCGGGGGUUCC------ACGUGUGGC-UG- -5'
5143 3' -57.6 NC_001798.1 + 71086 0.72 0.515995
Target:  5'- gCGUCAGCCCgCGgucGGcGUGCGCGCCcccgggGACg -3'
miRNA:   3'- -GUAGUCGGGgGU---UC-CACGUGUGG------CUG- -5'
5143 3' -57.6 NC_001798.1 + 145981 0.71 0.52578
Target:  5'- cCcgCAGCCUCCGGca-GCACGCCGACc -3'
miRNA:   3'- -GuaGUCGGGGGUUccaCGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 12657 0.71 0.535634
Target:  5'- --cCAGCaCCgCCAGGGUacugccggccaGCGCGCCGAUg -3'
miRNA:   3'- guaGUCG-GG-GGUUCCA-----------CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 78839 0.71 0.535634
Target:  5'- --cCGGCCCCU--GGcgcgGCACGCCGGCc -3'
miRNA:   3'- guaGUCGGGGGuuCCa---CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 48769 0.71 0.555528
Target:  5'- uGUCAGUCCUCGGGGacGCACGgcacccCCGGCg -3'
miRNA:   3'- gUAGUCGGGGGUUCCa-CGUGU------GGCUG- -5'
5143 3' -57.6 NC_001798.1 + 57725 0.71 0.565557
Target:  5'- --cCGGCCCCCGcgaaggaccgguGGGcGCGC-CCGGCg -3'
miRNA:   3'- guaGUCGGGGGU------------UCCaCGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 89131 0.7 0.585748
Target:  5'- gGUCcGCCUCC-AGGUGCGCGaCGGCc -3'
miRNA:   3'- gUAGuCGGGGGuUCCACGUGUgGCUG- -5'
5143 3' -57.6 NC_001798.1 + 2390 0.7 0.595896
Target:  5'- gCAguaGGCCUCCAGGGcgGCggccgaggGCGCCGGCg -3'
miRNA:   3'- -GUag-UCGGGGGUUCCa-CG--------UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 52484 0.7 0.606071
Target:  5'- ---uGGCCUgCGGGGacGCGCGCCGGCg -3'
miRNA:   3'- guagUCGGGgGUUCCa-CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 97420 0.7 0.616266
Target:  5'- uCGUCAGCCCCgagcagugcgaCGAGGagGCGCugCGcCg -3'
miRNA:   3'- -GUAGUCGGGG-----------GUUCCa-CGUGugGCuG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.