miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 2390 0.7 0.595896
Target:  5'- gCAguaGGCCUCCAGGGcgGCggccgaggGCGCCGGCg -3'
miRNA:   3'- -GUag-UCGGGGGUUCCa-CG--------UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 9123 0.68 0.737204
Target:  5'- ---gAGCCgCCgCGAGGUGguCugCGGCa -3'
miRNA:   3'- guagUCGG-GG-GUUCCACguGugGCUG- -5'
5143 3' -57.6 NC_001798.1 + 12657 0.71 0.535634
Target:  5'- --cCAGCaCCgCCAGGGUacugccggccaGCGCGCCGAUg -3'
miRNA:   3'- guaGUCG-GG-GGUUCCA-----------CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 18597 0.72 0.477643
Target:  5'- --gCAGCCCCCccGGGUccGCGCGCCGuCc -3'
miRNA:   3'- guaGUCGGGGGu-UCCA--CGUGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 21732 0.68 0.696578
Target:  5'- gGUguGCCCCU--GGUGCggcggcgaccgggACGCCGGCc -3'
miRNA:   3'- gUAguCGGGGGuuCCACG-------------UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 23135 0.67 0.802688
Target:  5'- gCcgCGGaCCCCCuccaUGCGCGCCGAUu -3'
miRNA:   3'- -GuaGUC-GGGGGuuccACGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 23568 0.7 0.626472
Target:  5'- gCGagGGCCCCgGGGGcgGCGCcCCGGCc -3'
miRNA:   3'- -GUagUCGGGGgUUCCa-CGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 23720 0.66 0.811498
Target:  5'- --gCGGCCCCgGcGGGUcgaGCuggACGCCGACg -3'
miRNA:   3'- guaGUCGGGGgU-UCCA---CG---UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 23872 0.67 0.793724
Target:  5'- --cCGGCCUCUggGGgGCGC-CCGAg -3'
miRNA:   3'- guaGUCGGGGGuuCCaCGUGuGGCUg -5'
5143 3' -57.6 NC_001798.1 + 24731 0.66 0.811498
Target:  5'- --gCGGCCgCCCcgcc-GCACGCCGACg -3'
miRNA:   3'- guaGUCGG-GGGuuccaCGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 25233 0.67 0.784615
Target:  5'- --cCGGCCCgCCGAGG-GC-C-CCGACc -3'
miRNA:   3'- guaGUCGGG-GGUUCCaCGuGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 25275 0.68 0.707593
Target:  5'- --cCAGCCgCCGGGGcccagccaCACGCCGGCg -3'
miRNA:   3'- guaGUCGGgGGUUCCac------GUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 25810 0.69 0.677408
Target:  5'- ---gAGUUCCUggGGcUGCugGCCGGCg -3'
miRNA:   3'- guagUCGGGGGuuCC-ACGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 25925 0.72 0.477643
Target:  5'- ---uGGCCUgCGAGGUGCugccCGCCGGCa -3'
miRNA:   3'- guagUCGGGgGUUCCACGu---GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 28977 0.66 0.828624
Target:  5'- -cUCcGCCCgccCCAGGGgGCGgCGCCGGCc -3'
miRNA:   3'- guAGuCGGG---GGUUCCaCGU-GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 30440 0.68 0.727413
Target:  5'- --cCGGCCCCCGgccgagcgccAGG-GCAgccccacgccCGCCGACg -3'
miRNA:   3'- guaGUCGGGGGU----------UCCaCGU----------GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 31637 0.66 0.811498
Target:  5'- ----cGCCCCCGuGGUGUcugcgaGCGCgGACg -3'
miRNA:   3'- guaguCGGGGGUuCCACG------UGUGgCUG- -5'
5143 3' -57.6 NC_001798.1 + 32300 0.67 0.77537
Target:  5'- -cUCGGCCCCCGcGcUGCuGCGCCG-Cg -3'
miRNA:   3'- guAGUCGGGGGUuCcACG-UGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 34974 0.68 0.696578
Target:  5'- --gCGGCCgCCGAGGUGCGgGggccccuCCGGCc -3'
miRNA:   3'- guaGUCGGgGGUUCCACGUgU-------GGCUG- -5'
5143 3' -57.6 NC_001798.1 + 38719 0.67 0.784615
Target:  5'- ---aGGCCCCCGGGauguaaaaGUGCAucgucuCGCCGGCc -3'
miRNA:   3'- guagUCGGGGGUUC--------CACGU------GUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.