miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 53248 0.66 0.845039
Target:  5'- cCGUgGGCgUCCUgcGGcaGCGCGCCGACg -3'
miRNA:   3'- -GUAgUCG-GGGGuuCCa-CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 72030 0.66 0.828624
Target:  5'- cCAUCGaguuuGCCCUgcGGGUGCugGCCugGGCg -3'
miRNA:   3'- -GUAGU-----CGGGGguUCCACGugUGG--CUG- -5'
5143 3' -57.6 NC_001798.1 + 63182 0.66 0.828624
Target:  5'- --aCGGCCCCggcguaCGAGGUGCugcgGCACuCGAa -3'
miRNA:   3'- guaGUCGGGG------GUUCCACG----UGUG-GCUg -5'
5143 3' -57.6 NC_001798.1 + 28977 0.66 0.828624
Target:  5'- -cUCcGCCCgccCCAGGGgGCGgCGCCGGCc -3'
miRNA:   3'- guAGuCGGG---GGUUCCaCGU-GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 151780 0.66 0.820146
Target:  5'- --gCAuCCCCCAGGcGUGCGgGgCGGCg -3'
miRNA:   3'- guaGUcGGGGGUUC-CACGUgUgGCUG- -5'
5143 3' -57.6 NC_001798.1 + 94696 0.66 0.820146
Target:  5'- ---aAGCCCCCGGGGU-CGaaccaGCCGAa -3'
miRNA:   3'- guagUCGGGGGUUCCAcGUg----UGGCUg -5'
5143 3' -57.6 NC_001798.1 + 31637 0.66 0.811498
Target:  5'- ----cGCCCCCGuGGUGUcugcgaGCGCgGACg -3'
miRNA:   3'- guaguCGGGGGUuCCACG------UGUGgCUG- -5'
5143 3' -57.6 NC_001798.1 + 24731 0.66 0.811498
Target:  5'- --gCGGCCgCCCcgcc-GCACGCCGACg -3'
miRNA:   3'- guaGUCGG-GGGuuccaCGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 23720 0.66 0.811498
Target:  5'- --gCGGCCCCgGcGGGUcgaGCuggACGCCGACg -3'
miRNA:   3'- guaGUCGGGGgU-UCCA---CG---UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 118804 0.66 0.828624
Target:  5'- uCGUCGccuGCCCCguggaccuGGGgcucacGCACGCCGGCa -3'
miRNA:   3'- -GUAGU---CGGGGgu------UCCa-----CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 147239 0.66 0.828624
Target:  5'- ---gGGgCCCCGGGGccccggGcCGCGCCGGCg -3'
miRNA:   3'- guagUCgGGGGUUCCa-----C-GUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 88529 0.66 0.845039
Target:  5'- gCAUCuuGCCCCCGcAGaUG-ACGCCGAUg -3'
miRNA:   3'- -GUAGu-CGGGGGU-UCcACgUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 73250 0.66 0.845039
Target:  5'- ---gGGCCCCCGGGGaccuggagGCccaagAUGCCGGCg -3'
miRNA:   3'- guagUCGGGGGUUCCa-------CG-----UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 59744 0.66 0.845039
Target:  5'- -uUCGG-CCCCGGGGUGCcuccGCuugguucCCGGCg -3'
miRNA:   3'- guAGUCgGGGGUUCCACG----UGu------GGCUG- -5'
5143 3' -57.6 NC_001798.1 + 84212 0.66 0.845039
Target:  5'- gAUCGcGCCCCCcGGG-GCGCcgugggGCCGGu -3'
miRNA:   3'- gUAGU-CGGGGGuUCCaCGUG------UGGCUg -5'
5143 3' -57.6 NC_001798.1 + 137979 0.66 0.836924
Target:  5'- ----cGCCCCCGccuGG-GCGCGCCG-Ca -3'
miRNA:   3'- guaguCGGGGGUu--CCaCGUGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 134507 0.66 0.836924
Target:  5'- --aCAGCCCCCA--GUGCGCGuCCu-- -3'
miRNA:   3'- guaGUCGGGGGUucCACGUGU-GGcug -5'
5143 3' -57.6 NC_001798.1 + 107219 0.66 0.836924
Target:  5'- -cUCAuGCCCCCGAcc-GCGC-CCGGCa -3'
miRNA:   3'- guAGU-CGGGGGUUccaCGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 125362 0.66 0.828624
Target:  5'- aGUCAcGCCCCCuGAGuUGC--GCCGGCa -3'
miRNA:   3'- gUAGU-CGGGGG-UUCcACGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 96088 0.67 0.802688
Target:  5'- gCAUCAGUCCgCGcGGgGCGCGCCucuGACc -3'
miRNA:   3'- -GUAGUCGGGgGUuCCaCGUGUGG---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.