Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5143 | 3' | -57.6 | NC_001798.1 | + | 126192 | 1.1 | 0.001572 |
Target: 5'- aCAUCAGCCCCCAAGGUGCACACCGACg -3' miRNA: 3'- -GUAGUCGGGGGUUCCACGUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 147035 | 0.78 | 0.240186 |
Target: 5'- -cUUGGCCgCCGAGGUGCGCcCCGGCc -3' miRNA: 3'- guAGUCGGgGGUUCCACGUGuGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 52630 | 0.76 | 0.318358 |
Target: 5'- --aCGGCCCCCGAGGUGgGCACguACa -3' miRNA: 3'- guaGUCGGGGGUUCCACgUGUGgcUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 61190 | 0.74 | 0.39701 |
Target: 5'- gGUCGGCCUgCAccGGcGCGCGCCGGCg -3' miRNA: 3'- gUAGUCGGGgGUu-CCaCGUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 85030 | 0.73 | 0.422924 |
Target: 5'- aCGUCcGCCCCgGGGGUGCcgucgaGCGCCGcCg -3' miRNA: 3'- -GUAGuCGGGGgUUCCACG------UGUGGCuG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 54488 | 0.72 | 0.496652 |
Target: 5'- cCcgCGGCCCCUcgGAGGUGCAggcgcCACCG-Cg -3' miRNA: 3'- -GuaGUCGGGGG--UUCCACGU-----GUGGCuG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 71086 | 0.72 | 0.515995 |
Target: 5'- gCGUCAGCCCgCGgucGGcGUGCGCGCCcccgggGACg -3' miRNA: 3'- -GUAGUCGGGgGU---UC-CACGUGUGG------CUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 103375 | 0.72 | 0.468274 |
Target: 5'- --aCGGCCCCCGAGGgucGUugACCacGGCg -3' miRNA: 3'- guaGUCGGGGGUUCCa--CGugUGG--CUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 25925 | 0.72 | 0.477643 |
Target: 5'- ---uGGCCUgCGAGGUGCugccCGCCGGCa -3' miRNA: 3'- guagUCGGGgGUUCCACGu---GUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 18597 | 0.72 | 0.477643 |
Target: 5'- --gCAGCCCCCccGGGUccGCGCGCCGuCc -3' miRNA: 3'- guaGUCGGGGGu-UCCA--CGUGUGGCuG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 135538 | 0.72 | 0.515995 |
Target: 5'- ---gGGCCCUCGAGGcguccgUGCGCGCCGuACu -3' miRNA: 3'- guagUCGGGGGUUCC------ACGUGUGGC-UG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 12657 | 0.71 | 0.535634 |
Target: 5'- --cCAGCaCCgCCAGGGUacugccggccaGCGCGCCGAUg -3' miRNA: 3'- guaGUCG-GG-GGUUCCA-----------CGUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 48769 | 0.71 | 0.555528 |
Target: 5'- uGUCAGUCCUCGGGGacGCACGgcacccCCGGCg -3' miRNA: 3'- gUAGUCGGGGGUUCCa-CGUGU------GGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 145981 | 0.71 | 0.52578 |
Target: 5'- cCcgCAGCCUCCGGca-GCACGCCGACc -3' miRNA: 3'- -GuaGUCGGGGGUUccaCGUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 57725 | 0.71 | 0.565557 |
Target: 5'- --cCGGCCCCCGcgaaggaccgguGGGcGCGC-CCGGCg -3' miRNA: 3'- guaGUCGGGGGU------------UCCaCGUGuGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 78839 | 0.71 | 0.535634 |
Target: 5'- --cCGGCCCCU--GGcgcgGCACGCCGGCc -3' miRNA: 3'- guaGUCGGGGGuuCCa---CGUGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 89131 | 0.7 | 0.585748 |
Target: 5'- gGUCcGCCUCC-AGGUGCGCGaCGGCc -3' miRNA: 3'- gUAGuCGGGGGuUCCACGUGUgGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 23568 | 0.7 | 0.626472 |
Target: 5'- gCGagGGCCCCgGGGGcgGCGCcCCGGCc -3' miRNA: 3'- -GUagUCGGGGgUUCCa-CGUGuGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 2390 | 0.7 | 0.595896 |
Target: 5'- gCAguaGGCCUCCAGGGcgGCggccgaggGCGCCGGCg -3' miRNA: 3'- -GUag-UCGGGGGUUCCa-CG--------UGUGGCUG- -5' |
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5143 | 3' | -57.6 | NC_001798.1 | + | 52484 | 0.7 | 0.606071 |
Target: 5'- ---uGGCCUgCGGGGacGCGCGCCGGCg -3' miRNA: 3'- guagUCGGGgGUUCCa-CGUGUGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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