miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 74196 0.7 0.626472
Target:  5'- cCAUCGGCCCCCuGGGcaugggGCucUACCGGg -3'
miRNA:   3'- -GUAGUCGGGGGuUCCa-----CGu-GUGGCUg -5'
5143 3' -57.6 NC_001798.1 + 97420 0.7 0.616266
Target:  5'- uCGUCAGCCCCgagcagugcgaCGAGGagGCGCugCGcCg -3'
miRNA:   3'- -GUAGUCGGGG-----------GUUCCa-CGUGugGCuG- -5'
5143 3' -57.6 NC_001798.1 + 89131 0.7 0.585748
Target:  5'- gGUCcGCCUCC-AGGUGCGCGaCGGCc -3'
miRNA:   3'- gUAGuCGGGGGuUCCACGUGUgGCUG- -5'
5143 3' -57.6 NC_001798.1 + 79503 0.69 0.677408
Target:  5'- ----cGCCgCCGGGGcgaggcguaucUGCGCGCCGGCg -3'
miRNA:   3'- guaguCGGgGGUUCC-----------ACGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 25810 0.69 0.677408
Target:  5'- ---gAGUUCCUggGGcUGCugGCCGGCg -3'
miRNA:   3'- guagUCGGGGGuuCC-ACGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 61881 0.69 0.666244
Target:  5'- --gCGGCCCCCucGGGcGCGCccucgaaGCCGGCc -3'
miRNA:   3'- guaGUCGGGGGu-UCCaCGUG-------UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 143303 0.69 0.687518
Target:  5'- cCGUCcGCCCCCGgcGGGUcGCcggccACGCuCGACg -3'
miRNA:   3'- -GUAGuCGGGGGU--UCCA-CG-----UGUG-GCUG- -5'
5143 3' -57.6 NC_001798.1 + 134154 0.69 0.636682
Target:  5'- -cUCGGCCCCCGGGGccgucgcgGC-CGCCcGCg -3'
miRNA:   3'- guAGUCGGGGGUUCCa-------CGuGUGGcUG- -5'
5143 3' -57.6 NC_001798.1 + 108023 0.69 0.66726
Target:  5'- --aUAGCCUCCGAGGUGCGgaGCCu-- -3'
miRNA:   3'- guaGUCGGGGGUUCCACGUg-UGGcug -5'
5143 3' -57.6 NC_001798.1 + 93346 0.69 0.66726
Target:  5'- -uUCGGCCCuccaccugaCCGAGGUGgACgacgccggGCCGGCg -3'
miRNA:   3'- guAGUCGGG---------GGUUCCACgUG--------UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 148672 0.69 0.657085
Target:  5'- --cCA-CCCCCAGGGU-CugGCCGGCc -3'
miRNA:   3'- guaGUcGGGGGUUCCAcGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 112763 0.69 0.64689
Target:  5'- uCAUCAGCCCgCGGGGaggGCggacGCACgGAUg -3'
miRNA:   3'- -GUAGUCGGGgGUUCCa--CG----UGUGgCUG- -5'
5143 3' -57.6 NC_001798.1 + 109367 0.68 0.746905
Target:  5'- ---uGGCCgCCCGGGGagcagcgggcUGCGCgGCCGACu -3'
miRNA:   3'- guagUCGG-GGGUUCC----------ACGUG-UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 84631 0.68 0.746905
Target:  5'- gCGUCAGCCCCgCAGgaucuGGUGCAgguccaggaACCGGu -3'
miRNA:   3'- -GUAGUCGGGG-GUU-----CCACGUg--------UGGCUg -5'
5143 3' -57.6 NC_001798.1 + 146629 0.68 0.697583
Target:  5'- gCAUUAgGCCCCCGcGG-GCAU-CCGGCg -3'
miRNA:   3'- -GUAGU-CGGGGGUuCCaCGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 34974 0.68 0.696578
Target:  5'- --gCGGCCgCCGAGGUGCGgGggccccuCCGGCc -3'
miRNA:   3'- guaGUCGGgGGUUCCACGUgU-------GGCUG- -5'
5143 3' -57.6 NC_001798.1 + 72274 0.68 0.707593
Target:  5'- --cCAGCCuCCCGAGGUGgGCAgCaGCc -3'
miRNA:   3'- guaGUCGG-GGGUUCCACgUGUgGcUG- -5'
5143 3' -57.6 NC_001798.1 + 56617 0.68 0.707593
Target:  5'- aCGUCA-CCCCCucGG-GCACacaGCCGGCc -3'
miRNA:   3'- -GUAGUcGGGGGuuCCaCGUG---UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 87471 0.68 0.707593
Target:  5'- aCGUCGGCCCaCC----UGCACuACCGGCu -3'
miRNA:   3'- -GUAGUCGGG-GGuuccACGUG-UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 53412 0.68 0.707593
Target:  5'- gCGUCGGCCgCCAAGcagGCGC-UCGGCg -3'
miRNA:   3'- -GUAGUCGGgGGUUCca-CGUGuGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.