miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 47854 0.68 0.727413
Target:  5'- --cCAcCCCCCGGGGgccccgUGgGCGCCGGCg -3'
miRNA:   3'- guaGUcGGGGGUUCC------ACgUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 48769 0.71 0.555528
Target:  5'- uGUCAGUCCUCGGGGacGCACGgcacccCCGGCg -3'
miRNA:   3'- gUAGUCGGGGGUUCCa-CGUGU------GGCUG- -5'
5143 3' -57.6 NC_001798.1 + 52484 0.7 0.606071
Target:  5'- ---uGGCCUgCGGGGacGCGCGCCGGCg -3'
miRNA:   3'- guagUCGGGgGUUCCa-CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 52630 0.76 0.318358
Target:  5'- --aCGGCCCCCGAGGUGgGCACguACa -3'
miRNA:   3'- guaGUCGGGGGUUCCACgUGUGgcUG- -5'
5143 3' -57.6 NC_001798.1 + 53248 0.66 0.845039
Target:  5'- cCGUgGGCgUCCUgcGGcaGCGCGCCGACg -3'
miRNA:   3'- -GUAgUCG-GGGGuuCCa-CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 53412 0.68 0.707593
Target:  5'- gCGUCGGCCgCCAAGcagGCGC-UCGGCg -3'
miRNA:   3'- -GUAGUCGGgGGUUCca-CGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 54488 0.72 0.496652
Target:  5'- cCcgCGGCCCCUcgGAGGUGCAggcgcCACCG-Cg -3'
miRNA:   3'- -GuaGUCGGGGG--UUCCACGU-----GUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 56617 0.68 0.707593
Target:  5'- aCGUCA-CCCCCucGG-GCACacaGCCGGCc -3'
miRNA:   3'- -GUAGUcGGGGGuuCCaCGUG---UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 56755 0.67 0.800015
Target:  5'- aCGUCAGCUggCAggugaAGGUGCGCggggggcccuggccGCCGACg -3'
miRNA:   3'- -GUAGUCGGggGU-----UCCACGUG--------------UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 57725 0.71 0.565557
Target:  5'- --cCGGCCCCCGcgaaggaccgguGGGcGCGC-CCGGCg -3'
miRNA:   3'- guaGUCGGGGGU------------UCCaCGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 58749 0.67 0.791006
Target:  5'- uCGUCAGCccgccgacgacaacCCCCAGGGU----GCCGACa -3'
miRNA:   3'- -GUAGUCG--------------GGGGUUCCAcgugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 59744 0.66 0.845039
Target:  5'- -uUCGG-CCCCGGGGUGCcuccGCuugguucCCGGCg -3'
miRNA:   3'- guAGUCgGGGGUUCCACG----UGu------GGCUG- -5'
5143 3' -57.6 NC_001798.1 + 61190 0.74 0.39701
Target:  5'- gGUCGGCCUgCAccGGcGCGCGCCGGCg -3'
miRNA:   3'- gUAGUCGGGgGUu-CCaCGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 61881 0.69 0.666244
Target:  5'- --gCGGCCCCCucGGGcGCGCccucgaaGCCGGCc -3'
miRNA:   3'- guaGUCGGGGGu-UCCaCGUG-------UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 62438 0.67 0.784615
Target:  5'- --cCAGCCCCCGGacgucgccGGUGgGcCGCgCGACg -3'
miRNA:   3'- guaGUCGGGGGUU--------CCACgU-GUG-GCUG- -5'
5143 3' -57.6 NC_001798.1 + 63182 0.66 0.828624
Target:  5'- --aCGGCCCCggcguaCGAGGUGCugcgGCACuCGAa -3'
miRNA:   3'- guaGUCGGGG------GUUCCACG----UGUG-GCUg -5'
5143 3' -57.6 NC_001798.1 + 69315 0.67 0.765997
Target:  5'- gGUCAGCCCUCcc---GCGCGCCGGg -3'
miRNA:   3'- gUAGUCGGGGGuuccaCGUGUGGCUg -5'
5143 3' -57.6 NC_001798.1 + 71086 0.72 0.515995
Target:  5'- gCGUCAGCCCgCGgucGGcGUGCGCGCCcccgggGACg -3'
miRNA:   3'- -GUAGUCGGGgGU---UC-CACGUGUGG------CUG- -5'
5143 3' -57.6 NC_001798.1 + 72030 0.66 0.828624
Target:  5'- cCAUCGaguuuGCCCUgcGGGUGCugGCCugGGCg -3'
miRNA:   3'- -GUAGU-----CGGGGguUCCACGugUGG--CUG- -5'
5143 3' -57.6 NC_001798.1 + 72274 0.68 0.707593
Target:  5'- --cCAGCCuCCCGAGGUGgGCAgCaGCc -3'
miRNA:   3'- guaGUCGG-GGGUUCCACgUGUgGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.