miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 3' -57.6 NC_001798.1 + 151780 0.66 0.820146
Target:  5'- --gCAuCCCCCAGGcGUGCGgGgCGGCg -3'
miRNA:   3'- guaGUcGGGGGUUC-CACGUgUgGCUG- -5'
5143 3' -57.6 NC_001798.1 + 149240 0.67 0.756506
Target:  5'- ---uGGCCCgCGGGG-GCGuCGCCGGCc -3'
miRNA:   3'- guagUCGGGgGUUCCaCGU-GUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 148672 0.69 0.657085
Target:  5'- --cCA-CCCCCAGGGU-CugGCCGGCc -3'
miRNA:   3'- guaGUcGGGGGUUCCAcGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 147239 0.66 0.828624
Target:  5'- ---gGGgCCCCGGGGccccggGcCGCGCCGGCg -3'
miRNA:   3'- guagUCgGGGGUUCCa-----C-GUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 147035 0.78 0.240186
Target:  5'- -cUUGGCCgCCGAGGUGCGCcCCGGCc -3'
miRNA:   3'- guAGUCGGgGGUUCCACGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 146629 0.68 0.697583
Target:  5'- gCAUUAgGCCCCCGcGG-GCAU-CCGGCg -3'
miRNA:   3'- -GUAGU-CGGGGGUuCCaCGUGuGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 145981 0.71 0.52578
Target:  5'- cCcgCAGCCUCCGGca-GCACGCCGACc -3'
miRNA:   3'- -GuaGUCGGGGGUUccaCGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 143303 0.69 0.687518
Target:  5'- cCGUCcGCCCCCGgcGGGUcGCcggccACGCuCGACg -3'
miRNA:   3'- -GUAGuCGGGGGU--UCCA-CG-----UGUG-GCUG- -5'
5143 3' -57.6 NC_001798.1 + 142485 0.7 0.626472
Target:  5'- --aCGGCCCCCGAGGcgGCGCGggggugCGAUa -3'
miRNA:   3'- guaGUCGGGGGUUCCa-CGUGUg-----GCUG- -5'
5143 3' -57.6 NC_001798.1 + 141133 0.67 0.793724
Target:  5'- gCAUCGGCaaCC-AGG-GC-CGCCGACa -3'
miRNA:   3'- -GUAGUCGggGGuUCCaCGuGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 137979 0.66 0.836924
Target:  5'- ----cGCCCCCGccuGG-GCGCGCCG-Ca -3'
miRNA:   3'- guaguCGGGGGUu--CCaCGUGUGGCuG- -5'
5143 3' -57.6 NC_001798.1 + 135538 0.72 0.515995
Target:  5'- ---gGGCCCUCGAGGcguccgUGCGCGCCGuACu -3'
miRNA:   3'- guagUCGGGGGUUCC------ACGUGUGGC-UG- -5'
5143 3' -57.6 NC_001798.1 + 135016 0.67 0.756506
Target:  5'- uCGUCcuGCCCCCGcGG-GCAUgGCCGGCc -3'
miRNA:   3'- -GUAGu-CGGGGGUuCCaCGUG-UGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 134507 0.66 0.836924
Target:  5'- --aCAGCCCCCA--GUGCGCGuCCu-- -3'
miRNA:   3'- guaGUCGGGGGUucCACGUGU-GGcug -5'
5143 3' -57.6 NC_001798.1 + 134154 0.69 0.636682
Target:  5'- -cUCGGCCCCCGGGGccgucgcgGC-CGCCcGCg -3'
miRNA:   3'- guAGUCGGGGGUUCCa-------CGuGUGGcUG- -5'
5143 3' -57.6 NC_001798.1 + 126192 1.1 0.001572
Target:  5'- aCAUCAGCCCCCAAGGUGCACACCGACg -3'
miRNA:   3'- -GUAGUCGGGGGUUCCACGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 125362 0.66 0.828624
Target:  5'- aGUCAcGCCCCCuGAGuUGC--GCCGGCa -3'
miRNA:   3'- gUAGU-CGGGGG-UUCcACGugUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 118804 0.66 0.828624
Target:  5'- uCGUCGccuGCCCCguggaccuGGGgcucacGCACGCCGGCa -3'
miRNA:   3'- -GUAGU---CGGGGgu------UCCa-----CGUGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 117537 0.67 0.806231
Target:  5'- --cCAGCCCCUcccgGucuuuggcugcgcccAGGUGCcgcggcGCGCCGGCa -3'
miRNA:   3'- guaGUCGGGGG----U---------------UCCACG------UGUGGCUG- -5'
5143 3' -57.6 NC_001798.1 + 112763 0.69 0.64689
Target:  5'- uCAUCAGCCCgCGGGGaggGCggacGCACgGAUg -3'
miRNA:   3'- -GUAGUCGGGgGUUCCa--CG----UGUGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.