miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 5' -56.3 NC_001798.1 + 126227 1.09 0.002353
Target:  5'- aAGGCCUGGCUCGCGUCCUACAUACACu -3'
miRNA:   3'- -UCCGGACCGAGCGCAGGAUGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 31762 0.67 0.843102
Target:  5'- uGGGCCgGGCaggCGCGaCCgACGcGCGCg -3'
miRNA:   3'- -UCCGGaCCGa--GCGCaGGaUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 149675 0.67 0.834865
Target:  5'- cGGGCCccgGGCUCGgGgccgcCCUcGCGUgGCGCg -3'
miRNA:   3'- -UCCGGa--CCGAGCgCa----GGA-UGUA-UGUG- -5'
5143 5' -56.3 NC_001798.1 + 74162 0.67 0.817838
Target:  5'- uGGGCCaugcGGC-CGCuGUCCUAC--ACGCu -3'
miRNA:   3'- -UCCGGa---CCGaGCG-CAGGAUGuaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 53245 0.67 0.817838
Target:  5'- cGGCCgUGG---GCGUCCUGCGgcaGCGCg -3'
miRNA:   3'- uCCGG-ACCgagCGCAGGAUGUa--UGUG- -5'
5143 5' -56.3 NC_001798.1 + 1253 0.67 0.817838
Target:  5'- gGGGCg-GGCcCGCGUCC-GCGUcgucGCGCa -3'
miRNA:   3'- -UCCGgaCCGaGCGCAGGaUGUA----UGUG- -5'
5143 5' -56.3 NC_001798.1 + 140102 0.68 0.800127
Target:  5'- gAGGCCgGGCUCcugggGCGgcaCCUACu--CACg -3'
miRNA:   3'- -UCCGGaCCGAG-----CGCa--GGAUGuauGUG- -5'
5143 5' -56.3 NC_001798.1 + 52171 0.68 0.781801
Target:  5'- gAGGCCgcguuugcGGggCGCGUCCUggACGUGCugGCg -3'
miRNA:   3'- -UCCGGa-------CCgaGCGCAGGA--UGUAUG--UG- -5'
5143 5' -56.3 NC_001798.1 + 32242 0.68 0.780869
Target:  5'- cGGGgCUGGUgggagcgUCGCGUCC-GCGUccgGCGCu -3'
miRNA:   3'- -UCCgGACCG-------AGCGCAGGaUGUA---UGUG- -5'
5143 5' -56.3 NC_001798.1 + 72712 0.67 0.843102
Target:  5'- cGGGuuCCUGGCcaUCGUGUCggGCAUcCACg -3'
miRNA:   3'- -UCC--GGACCG--AGCGCAGgaUGUAuGUG- -5'
5143 5' -56.3 NC_001798.1 + 25965 0.67 0.851145
Target:  5'- uGGCC-GGCggCGCGggaCCUGCGccGCACc -3'
miRNA:   3'- uCCGGaCCGa-GCGCa--GGAUGUa-UGUG- -5'
5143 5' -56.3 NC_001798.1 + 59561 0.67 0.851145
Target:  5'- gGGGCUggGGCUCGCGUCgccgguCUGgAgguCGCg -3'
miRNA:   3'- -UCCGGa-CCGAGCGCAG------GAUgUau-GUG- -5'
5143 5' -56.3 NC_001798.1 + 111016 0.66 0.894961
Target:  5'- uGGCCgcGGCcagGCGUCCguggccgGCGUACAa -3'
miRNA:   3'- uCCGGa-CCGag-CGCAGGa------UGUAUGUg -5'
5143 5' -56.3 NC_001798.1 + 71603 0.66 0.888214
Target:  5'- cGGCCUgucgGGCg-GCGUCCU-CAgccagACGCu -3'
miRNA:   3'- uCCGGA----CCGagCGCAGGAuGUa----UGUG- -5'
5143 5' -56.3 NC_001798.1 + 150347 0.66 0.881239
Target:  5'- gGGGCgCgcGGUgCGCGUCC-ACcgGCACg -3'
miRNA:   3'- -UCCG-Ga-CCGaGCGCAGGaUGuaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 25496 0.66 0.881239
Target:  5'- cGGGCCcgcUGcGCcgCGCGgcggCCUGgAUGCGCc -3'
miRNA:   3'- -UCCGG---AC-CGa-GCGCa---GGAUgUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 105409 0.66 0.881239
Target:  5'- aGGGCCgccgcGGC-CGCGgugcgcugggCCUGCA-GCACu -3'
miRNA:   3'- -UCCGGa----CCGaGCGCa---------GGAUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 92293 0.66 0.881239
Target:  5'- aAGGCCUGGagcUGCuGUCgCUACugucgGCGCg -3'
miRNA:   3'- -UCCGGACCga-GCG-CAG-GAUGua---UGUG- -5'
5143 5' -56.3 NC_001798.1 + 11986 0.66 0.866619
Target:  5'- gGGGCUgugGGCguggUGCGUCgaGCG-ACACa -3'
miRNA:   3'- -UCCGGa--CCGa---GCGCAGgaUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 121245 0.66 0.862064
Target:  5'- gAGuGCCUGGCggcggcggggguccCGCuGUCCgcccuCGUGCGCg -3'
miRNA:   3'- -UC-CGGACCGa-------------GCG-CAGGau---GUAUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.