miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 5' -56.3 NC_001798.1 + 126227 1.09 0.002353
Target:  5'- aAGGCCUGGCUCGCGUCCUACAUACACu -3'
miRNA:   3'- -UCCGGACCGAGCGCAGGAUGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 114792 0.77 0.298616
Target:  5'- gAGGCCUGGCUCGUGgaCCUgaccACGgcgACGCa -3'
miRNA:   3'- -UCCGGACCGAGCGCa-GGA----UGUa--UGUG- -5'
5143 5' -56.3 NC_001798.1 + 65762 0.76 0.37461
Target:  5'- cGGuGCCggGGCUgGCGUcguugaacgCCUGCAUGCACa -3'
miRNA:   3'- -UC-CGGa-CCGAgCGCA---------GGAUGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 76378 0.74 0.426096
Target:  5'- cGGCCUGGCUCuCGgUCCUgACcgACGCc -3'
miRNA:   3'- uCCGGACCGAGcGC-AGGA-UGuaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 20462 0.74 0.462668
Target:  5'- uGGGCCUGGCgagcagaGCG-CCggugcGCGUGCGCg -3'
miRNA:   3'- -UCCGGACCGag-----CGCaGGa----UGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 61917 0.73 0.485385
Target:  5'- -cGCCUGGCUcaccuguucuguaucCGCGUUCUGCGgGCGCu -3'
miRNA:   3'- ucCGGACCGA---------------GCGCAGGAUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 150386 0.73 0.510578
Target:  5'- cGGGCCcGGC-CGCGUCCgcgcucGCAgACACc -3'
miRNA:   3'- -UCCGGaCCGaGCGCAGGa-----UGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 49586 0.72 0.580768
Target:  5'- -cGCCUGGCgCGCGUCCUguuucuGCAucUAUACc -3'
miRNA:   3'- ucCGGACCGaGCGCAGGA------UGU--AUGUG- -5'
5143 5' -56.3 NC_001798.1 + 43226 0.71 0.590996
Target:  5'- gGGGUUUGGaccgaCGCGUCCUGCAUGagaGCc -3'
miRNA:   3'- -UCCGGACCga---GCGCAGGAUGUAUg--UG- -5'
5143 5' -56.3 NC_001798.1 + 24769 0.71 0.601253
Target:  5'- -cGCCUGGCUgCGCGagCUGCgguucGUGCGCg -3'
miRNA:   3'- ucCGGACCGA-GCGCagGAUG-----UAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 143765 0.71 0.601253
Target:  5'- cGGGCCUGa-UCGCGUUCUggGCAUGgGCg -3'
miRNA:   3'- -UCCGGACcgAGCGCAGGA--UGUAUgUG- -5'
5143 5' -56.3 NC_001798.1 + 60779 0.7 0.659934
Target:  5'- aAGGCCUGcaggaucccguucaGCUCgGCGcCCUGCA-GCACu -3'
miRNA:   3'- -UCCGGAC--------------CGAG-CGCaGGAUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 77531 0.7 0.663015
Target:  5'- gAGGCUgGGUUCGgGggCCUGC-UGCACg -3'
miRNA:   3'- -UCCGGaCCGAGCgCa-GGAUGuAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 121636 0.7 0.663015
Target:  5'- cGGCCgacGGCgCGCG-CCU-CAUGCGCc -3'
miRNA:   3'- uCCGGa--CCGaGCGCaGGAuGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 80393 0.7 0.68349
Target:  5'- cAGGcCCUGGCggcggugaGCGUCCU-CGgGCGCa -3'
miRNA:   3'- -UCC-GGACCGag------CGCAGGAuGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 39476 0.7 0.693668
Target:  5'- gGGGCCUGGCgCGUG-CCU-CGUGgcCGCg -3'
miRNA:   3'- -UCCGGACCGaGCGCaGGAuGUAU--GUG- -5'
5143 5' -56.3 NC_001798.1 + 101742 0.7 0.693668
Target:  5'- cGGCCcgGGC-CGUGUCC-ACGUuCACg -3'
miRNA:   3'- uCCGGa-CCGaGCGCAGGaUGUAuGUG- -5'
5143 5' -56.3 NC_001798.1 + 40409 0.7 0.693668
Target:  5'- cAGGUCUGGgUC-CG-CCUucGCGUACACg -3'
miRNA:   3'- -UCCGGACCgAGcGCaGGA--UGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 43126 0.69 0.713857
Target:  5'- cGGCg-GGCgCGCGUCCcGCGUcACGCg -3'
miRNA:   3'- uCCGgaCCGaGCGCAGGaUGUA-UGUG- -5'
5143 5' -56.3 NC_001798.1 + 100877 0.69 0.72385
Target:  5'- cGGCCUGGUcgcggccuucuUCGCcuuccgcuacGUCCUGCAacUGCAa -3'
miRNA:   3'- uCCGGACCG-----------AGCG----------CAGGAUGU--AUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.