Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5143 | 5' | -56.3 | NC_001798.1 | + | 111016 | 0.66 | 0.894961 |
Target: 5'- uGGCCgcGGCcagGCGUCCguggccgGCGUACAa -3' miRNA: 3'- uCCGGa-CCGag-CGCAGGa------UGUAUGUg -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 151628 | 0.66 | 0.894961 |
Target: 5'- gGGGCgUGGC-CGCGUCCauCAggccCGCc -3' miRNA: 3'- -UCCGgACCGaGCGCAGGauGUau--GUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 71603 | 0.66 | 0.888214 |
Target: 5'- cGGCCUgucgGGCg-GCGUCCU-CAgccagACGCu -3' miRNA: 3'- uCCGGA----CCGagCGCAGGAuGUa----UGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 150347 | 0.66 | 0.881239 |
Target: 5'- gGGGCgCgcGGUgCGCGUCC-ACcgGCACg -3' miRNA: 3'- -UCCG-Ga-CCGaGCGCAGGaUGuaUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 25496 | 0.66 | 0.881239 |
Target: 5'- cGGGCCcgcUGcGCcgCGCGgcggCCUGgAUGCGCc -3' miRNA: 3'- -UCCGG---AC-CGa-GCGCa---GGAUgUAUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 105409 | 0.66 | 0.881239 |
Target: 5'- aGGGCCgccgcGGC-CGCGgugcgcugggCCUGCA-GCACu -3' miRNA: 3'- -UCCGGa----CCGaGCGCa---------GGAUGUaUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 92293 | 0.66 | 0.881239 |
Target: 5'- aAGGCCUGGagcUGCuGUCgCUACugucgGCGCg -3' miRNA: 3'- -UCCGGACCga-GCG-CAG-GAUGua---UGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 11986 | 0.66 | 0.866619 |
Target: 5'- gGGGCUgugGGCguggUGCGUCgaGCG-ACACa -3' miRNA: 3'- -UCCGGa--CCGa---GCGCAGgaUGUaUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 121245 | 0.66 | 0.862064 |
Target: 5'- gAGuGCCUGGCggcggcggggguccCGCuGUCCgcccuCGUGCGCg -3' miRNA: 3'- -UC-CGGACCGa-------------GCG-CAGGau---GUAUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 25965 | 0.67 | 0.851145 |
Target: 5'- uGGCC-GGCggCGCGggaCCUGCGccGCACc -3' miRNA: 3'- uCCGGaCCGa-GCGCa--GGAUGUa-UGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 59561 | 0.67 | 0.851145 |
Target: 5'- gGGGCUggGGCUCGCGUCgccgguCUGgAgguCGCg -3' miRNA: 3'- -UCCGGa-CCGAGCGCAG------GAUgUau-GUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 72712 | 0.67 | 0.843102 |
Target: 5'- cGGGuuCCUGGCcaUCGUGUCggGCAUcCACg -3' miRNA: 3'- -UCC--GGACCG--AGCGCAGgaUGUAuGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 31762 | 0.67 | 0.843102 |
Target: 5'- uGGGCCgGGCaggCGCGaCCgACGcGCGCg -3' miRNA: 3'- -UCCGGaCCGa--GCGCaGGaUGUaUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 149675 | 0.67 | 0.834865 |
Target: 5'- cGGGCCccgGGCUCGgGgccgcCCUcGCGUgGCGCg -3' miRNA: 3'- -UCCGGa--CCGAGCgCa----GGA-UGUA-UGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 74162 | 0.67 | 0.817838 |
Target: 5'- uGGGCCaugcGGC-CGCuGUCCUAC--ACGCu -3' miRNA: 3'- -UCCGGa---CCGaGCG-CAGGAUGuaUGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 53245 | 0.67 | 0.817838 |
Target: 5'- cGGCCgUGG---GCGUCCUGCGgcaGCGCg -3' miRNA: 3'- uCCGG-ACCgagCGCAGGAUGUa--UGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 1253 | 0.67 | 0.817838 |
Target: 5'- gGGGCg-GGCcCGCGUCC-GCGUcgucGCGCa -3' miRNA: 3'- -UCCGgaCCGaGCGCAGGaUGUA----UGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 140102 | 0.68 | 0.800127 |
Target: 5'- gAGGCCgGGCUCcugggGCGgcaCCUACu--CACg -3' miRNA: 3'- -UCCGGaCCGAG-----CGCa--GGAUGuauGUG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 52171 | 0.68 | 0.781801 |
Target: 5'- gAGGCCgcguuugcGGggCGCGUCCUggACGUGCugGCg -3' miRNA: 3'- -UCCGGa-------CCgaGCGCAGGA--UGUAUG--UG- -5' |
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5143 | 5' | -56.3 | NC_001798.1 | + | 32242 | 0.68 | 0.780869 |
Target: 5'- cGGGgCUGGUgggagcgUCGCGUCC-GCGUccgGCGCu -3' miRNA: 3'- -UCCgGACCG-------AGCGCAGGaUGUA---UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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