miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 5' -56.3 NC_001798.1 + 1253 0.67 0.817838
Target:  5'- gGGGCg-GGCcCGCGUCC-GCGUcgucGCGCa -3'
miRNA:   3'- -UCCGgaCCGaGCGCAGGaUGUA----UGUG- -5'
5143 5' -56.3 NC_001798.1 + 11986 0.66 0.866619
Target:  5'- gGGGCUgugGGCguggUGCGUCgaGCG-ACACa -3'
miRNA:   3'- -UCCGGa--CCGa---GCGCAGgaUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 20462 0.74 0.462668
Target:  5'- uGGGCCUGGCgagcagaGCG-CCggugcGCGUGCGCg -3'
miRNA:   3'- -UCCGGACCGag-----CGCaGGa----UGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 24769 0.71 0.601253
Target:  5'- -cGCCUGGCUgCGCGagCUGCgguucGUGCGCg -3'
miRNA:   3'- ucCGGACCGA-GCGCagGAUG-----UAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 25496 0.66 0.881239
Target:  5'- cGGGCCcgcUGcGCcgCGCGgcggCCUGgAUGCGCc -3'
miRNA:   3'- -UCCGG---AC-CGa-GCGCa---GGAUgUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 25965 0.67 0.851145
Target:  5'- uGGCC-GGCggCGCGggaCCUGCGccGCACc -3'
miRNA:   3'- uCCGGaCCGa-GCGCa--GGAUGUa-UGUG- -5'
5143 5' -56.3 NC_001798.1 + 31762 0.67 0.843102
Target:  5'- uGGGCCgGGCaggCGCGaCCgACGcGCGCg -3'
miRNA:   3'- -UCCGGaCCGa--GCGCaGGaUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 32242 0.68 0.780869
Target:  5'- cGGGgCUGGUgggagcgUCGCGUCC-GCGUccgGCGCu -3'
miRNA:   3'- -UCCgGACCG-------AGCGCAGGaUGUA---UGUG- -5'
5143 5' -56.3 NC_001798.1 + 39476 0.7 0.693668
Target:  5'- gGGGCCUGGCgCGUG-CCU-CGUGgcCGCg -3'
miRNA:   3'- -UCCGGACCGaGCGCaGGAuGUAU--GUG- -5'
5143 5' -56.3 NC_001798.1 + 40409 0.7 0.693668
Target:  5'- cAGGUCUGGgUC-CG-CCUucGCGUACACg -3'
miRNA:   3'- -UCCGGACCgAGcGCaGGA--UGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 43126 0.69 0.713857
Target:  5'- cGGCg-GGCgCGCGUCCcGCGUcACGCg -3'
miRNA:   3'- uCCGgaCCGaGCGCAGGaUGUA-UGUG- -5'
5143 5' -56.3 NC_001798.1 + 43226 0.71 0.590996
Target:  5'- gGGGUUUGGaccgaCGCGUCCUGCAUGagaGCc -3'
miRNA:   3'- -UCCGGACCga---GCGCAGGAUGUAUg--UG- -5'
5143 5' -56.3 NC_001798.1 + 49586 0.72 0.580768
Target:  5'- -cGCCUGGCgCGCGUCCUguuucuGCAucUAUACc -3'
miRNA:   3'- ucCGGACCGaGCGCAGGA------UGU--AUGUG- -5'
5143 5' -56.3 NC_001798.1 + 52171 0.68 0.781801
Target:  5'- gAGGCCgcguuugcGGggCGCGUCCUggACGUGCugGCg -3'
miRNA:   3'- -UCCGGa-------CCgaGCGCAGGA--UGUAUG--UG- -5'
5143 5' -56.3 NC_001798.1 + 53245 0.67 0.817838
Target:  5'- cGGCCgUGG---GCGUCCUGCGgcaGCGCg -3'
miRNA:   3'- uCCGG-ACCgagCGCAGGAUGUa--UGUG- -5'
5143 5' -56.3 NC_001798.1 + 59561 0.67 0.851145
Target:  5'- gGGGCUggGGCUCGCGUCgccgguCUGgAgguCGCg -3'
miRNA:   3'- -UCCGGa-CCGAGCGCAG------GAUgUau-GUG- -5'
5143 5' -56.3 NC_001798.1 + 60779 0.7 0.659934
Target:  5'- aAGGCCUGcaggaucccguucaGCUCgGCGcCCUGCA-GCACu -3'
miRNA:   3'- -UCCGGAC--------------CGAG-CGCaGGAUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 61917 0.73 0.485385
Target:  5'- -cGCCUGGCUcaccuguucuguaucCGCGUUCUGCGgGCGCu -3'
miRNA:   3'- ucCGGACCGA---------------GCGCAGGAUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 65762 0.76 0.37461
Target:  5'- cGGuGCCggGGCUgGCGUcguugaacgCCUGCAUGCACa -3'
miRNA:   3'- -UC-CGGa-CCGAgCGCA---------GGAUGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 71603 0.66 0.888214
Target:  5'- cGGCCUgucgGGCg-GCGUCCU-CAgccagACGCu -3'
miRNA:   3'- uCCGGA----CCGagCGCAGGAuGUa----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.