miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5143 5' -56.3 NC_001798.1 + 151628 0.66 0.894961
Target:  5'- gGGGCgUGGC-CGCGUCCauCAggccCGCc -3'
miRNA:   3'- -UCCGgACCGaGCGCAGGauGUau--GUG- -5'
5143 5' -56.3 NC_001798.1 + 150386 0.73 0.510578
Target:  5'- cGGGCCcGGC-CGCGUCCgcgcucGCAgACACc -3'
miRNA:   3'- -UCCGGaCCGaGCGCAGGa-----UGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 150347 0.66 0.881239
Target:  5'- gGGGCgCgcGGUgCGCGUCC-ACcgGCACg -3'
miRNA:   3'- -UCCG-Ga-CCGaGCGCAGGaUGuaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 149675 0.67 0.834865
Target:  5'- cGGGCCccgGGCUCGgGgccgcCCUcGCGUgGCGCg -3'
miRNA:   3'- -UCCGGa--CCGAGCgCa----GGA-UGUA-UGUG- -5'
5143 5' -56.3 NC_001798.1 + 143765 0.71 0.601253
Target:  5'- cGGGCCUGa-UCGCGUUCUggGCAUGgGCg -3'
miRNA:   3'- -UCCGGACcgAGCGCAGGA--UGUAUgUG- -5'
5143 5' -56.3 NC_001798.1 + 140102 0.68 0.800127
Target:  5'- gAGGCCgGGCUCcugggGCGgcaCCUACu--CACg -3'
miRNA:   3'- -UCCGGaCCGAG-----CGCa--GGAUGuauGUG- -5'
5143 5' -56.3 NC_001798.1 + 134988 0.68 0.760056
Target:  5'- gGGGCCUGGCccgCGgugggcgccaggguCGUCCUGCcccCGCg -3'
miRNA:   3'- -UCCGGACCGa--GC--------------GCAGGAUGuauGUG- -5'
5143 5' -56.3 NC_001798.1 + 126227 1.09 0.002353
Target:  5'- aAGGCCUGGCUCGCGUCCUACAUACACu -3'
miRNA:   3'- -UCCGGACCGAGCGCAGGAUGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 121636 0.7 0.663015
Target:  5'- cGGCCgacGGCgCGCG-CCU-CAUGCGCc -3'
miRNA:   3'- uCCGGa--CCGaGCGCaGGAuGUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 121245 0.66 0.862064
Target:  5'- gAGuGCCUGGCggcggcggggguccCGCuGUCCgcccuCGUGCGCg -3'
miRNA:   3'- -UC-CGGACCGa-------------GCG-CAGGau---GUAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 114792 0.77 0.298616
Target:  5'- gAGGCCUGGCUCGUGgaCCUgaccACGgcgACGCa -3'
miRNA:   3'- -UCCGGACCGAGCGCa-GGA----UGUa--UGUG- -5'
5143 5' -56.3 NC_001798.1 + 111016 0.66 0.894961
Target:  5'- uGGCCgcGGCcagGCGUCCguggccgGCGUACAa -3'
miRNA:   3'- uCCGGa-CCGag-CGCAGGa------UGUAUGUg -5'
5143 5' -56.3 NC_001798.1 + 105409 0.66 0.881239
Target:  5'- aGGGCCgccgcGGC-CGCGgugcgcugggCCUGCA-GCACu -3'
miRNA:   3'- -UCCGGa----CCGaGCGCa---------GGAUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 101742 0.7 0.693668
Target:  5'- cGGCCcgGGC-CGUGUCC-ACGUuCACg -3'
miRNA:   3'- uCCGGa-CCGaGCGCAGGaUGUAuGUG- -5'
5143 5' -56.3 NC_001798.1 + 100877 0.69 0.72385
Target:  5'- cGGCCUGGUcgcggccuucuUCGCcuuccgcuacGUCCUGCAacUGCAa -3'
miRNA:   3'- uCCGGACCG-----------AGCG----------CAGGAUGU--AUGUg -5'
5143 5' -56.3 NC_001798.1 + 92293 0.66 0.881239
Target:  5'- aAGGCCUGGagcUGCuGUCgCUACugucgGCGCg -3'
miRNA:   3'- -UCCGGACCga-GCG-CAG-GAUGua---UGUG- -5'
5143 5' -56.3 NC_001798.1 + 81423 0.68 0.762929
Target:  5'- cGGCCUGgaggaGCUgGCGUCCgACG-ACGCc -3'
miRNA:   3'- uCCGGAC-----CGAgCGCAGGaUGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 80393 0.7 0.68349
Target:  5'- cAGGcCCUGGCggcggugaGCGUCCU-CGgGCGCa -3'
miRNA:   3'- -UCC-GGACCGag------CGCAGGAuGUaUGUG- -5'
5143 5' -56.3 NC_001798.1 + 77531 0.7 0.663015
Target:  5'- gAGGCUgGGUUCGgGggCCUGC-UGCACg -3'
miRNA:   3'- -UCCGGaCCGAGCgCa-GGAUGuAUGUG- -5'
5143 5' -56.3 NC_001798.1 + 76378 0.74 0.426096
Target:  5'- cGGCCUGGCUCuCGgUCCUgACcgACGCc -3'
miRNA:   3'- uCCGGACCGAGcGC-AGGA-UGuaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.