miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 142179 0.73 0.559958
Target:  5'- cGCGCgguucUGACGcggGGUCGAG-CGCGCCa -3'
miRNA:   3'- -CGCG-----GCUGCaaaCCGGCUCuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 2209 0.73 0.559958
Target:  5'- cCGCgCGGCGcagcgGGcCCGAGGCGCGCa -3'
miRNA:   3'- cGCG-GCUGCaaa--CC-GGCUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 111062 0.73 0.569847
Target:  5'- cGCGCCGAgguacaugaCGUgcucGGgCGAGACGgACCc -3'
miRNA:   3'- -CGCGGCU---------GCAaa--CCgGCUCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 43053 0.73 0.569847
Target:  5'- uGCGgCG-CGUgagccgccGGCCGAG-CGCGCCg -3'
miRNA:   3'- -CGCgGCuGCAaa------CCGGCUCuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 46241 0.73 0.569847
Target:  5'- gGCGCCG----UUGGCCGGGACGguCa -3'
miRNA:   3'- -CGCGGCugcaAACCGGCUCUGCguGg -5'
5144 3' -56.4 NC_001798.1 + 71965 0.73 0.579778
Target:  5'- cGUGCUGGCccuggUGGUCgGGGACGCGCUg -3'
miRNA:   3'- -CGCGGCUGcaa--ACCGG-CUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 132141 0.73 0.579778
Target:  5'- uGCGCCGcCGgg-GGCCGgcGGGCgggGCGCCc -3'
miRNA:   3'- -CGCGGCuGCaaaCCGGC--UCUG---CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 54575 0.72 0.59774
Target:  5'- uGCGCCGgccggccggccACGUauuacacgcauaUGGCCGGGGCGCcCCc -3'
miRNA:   3'- -CGCGGC-----------UGCAa-----------ACCGGCUCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 25333 0.72 0.599742
Target:  5'- uGCGCCccGCGggccgUGGCCGAGcucACGgACCa -3'
miRNA:   3'- -CGCGGc-UGCaa---ACCGGCUC---UGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 24841 0.72 0.606753
Target:  5'- -gGCCGGCGgcagcgaggccgccgUGGCCGccguGCGCGCCg -3'
miRNA:   3'- cgCGGCUGCaa-------------ACCGGCuc--UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 131450 0.72 0.606753
Target:  5'- gGCGCgGAUGcuuuacgggggggaUUUGGCCGAGugGguUCc -3'
miRNA:   3'- -CGCGgCUGC--------------AAACCGGCUCugCguGG- -5'
5144 3' -56.4 NC_001798.1 + 41380 0.72 0.609761
Target:  5'- gGCGCCGG-GgaUGGCCGGGAgGgACa -3'
miRNA:   3'- -CGCGGCUgCaaACCGGCUCUgCgUGg -5'
5144 3' -56.4 NC_001798.1 + 79501 0.72 0.609761
Target:  5'- uGCGCCGcCGg--GG-CGAGGCGUAUCu -3'
miRNA:   3'- -CGCGGCuGCaaaCCgGCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 8887 0.72 0.619797
Target:  5'- gGCGCUGGCGgagGGCgGAGGCGaaggugggguUGCCg -3'
miRNA:   3'- -CGCGGCUGCaaaCCGgCUCUGC----------GUGG- -5'
5144 3' -56.4 NC_001798.1 + 154070 0.72 0.619797
Target:  5'- aGCGCCGgggcgcggcACGgcUGgagcGCCGGGGCGCgGCCg -3'
miRNA:   3'- -CGCGGC---------UGCaaAC----CGGCUCUGCG-UGG- -5'
5144 3' -56.4 NC_001798.1 + 4358 0.72 0.629842
Target:  5'- aGCGCCGGCGg------GGGGCGCGCCg -3'
miRNA:   3'- -CGCGGCUGCaaaccggCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 2618 0.72 0.629842
Target:  5'- gGCGCCGcccgGCGgcgcccUGGCCGGGGCGgGgCu -3'
miRNA:   3'- -CGCGGC----UGCaa----ACCGGCUCUGCgUgG- -5'
5144 3' -56.4 NC_001798.1 + 32788 0.72 0.629842
Target:  5'- cGCGCCcGCGcc-GGCCGGcGACGCcCCc -3'
miRNA:   3'- -CGCGGcUGCaaaCCGGCU-CUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 122357 0.72 0.629842
Target:  5'- uCGgUGGCGUggGGCgGGcGACGCGCCc -3'
miRNA:   3'- cGCgGCUGCAaaCCGgCU-CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 121549 0.72 0.629842
Target:  5'- uGCGCCuGGCGUggGGCCcguGGGCG-ACCu -3'
miRNA:   3'- -CGCGG-CUGCAaaCCGGc--UCUGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.