miRNA display CGI


Results 41 - 60 of 337 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 43479 0.74 0.222636
Target:  5'- gGgCGGGCGUgAGGgCCGCCGGgGCa -3'
miRNA:   3'- gCgGCUCGCAgUCCgGGCGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 80433 0.73 0.233061
Target:  5'- uGCCGAGCGcCGcuuuGGCCgCGCUGugGaCCu -3'
miRNA:   3'- gCGGCUCGCaGU----CCGG-GCGGCugC-GG- -5'
5145 5' -63.7 NC_001798.1 + 91804 0.73 0.233061
Target:  5'- gCGCgGGGCGUgGGGaCCGugggcggggcCCGACGCCg -3'
miRNA:   3'- -GCGgCUCGCAgUCCgGGC----------GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 150028 0.73 0.233061
Target:  5'- uCGcCCGAGUccgaGUCcgGGGCCCgGCgCGGCGCCg -3'
miRNA:   3'- -GC-GGCUCG----CAG--UCCGGG-CG-GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 77708 0.73 0.238426
Target:  5'- aGCagCGAGCG-CuGGgCCGCCGGCGUCg -3'
miRNA:   3'- gCG--GCUCGCaGuCCgGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 154088 0.73 0.238426
Target:  5'- gGCUgGAGCGcCgGGGCgCgGCCGGCGCCg -3'
miRNA:   3'- gCGG-CUCGCaG-UCCG-GgCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24841 0.73 0.238426
Target:  5'- gGCCG-GCGgcagCgAGG-CCGCCGugGCCg -3'
miRNA:   3'- gCGGCuCGCa---G-UCCgGGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 79952 0.73 0.243893
Target:  5'- gGCUGGGCGUCcGGagCGgCGGCGCCg -3'
miRNA:   3'- gCGGCUCGCAGuCCggGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25238 0.73 0.249465
Target:  5'- cCGCCGAGgGccccgacccgCAGGgCgGCUGGCGCCg -3'
miRNA:   3'- -GCGGCUCgCa---------GUCCgGgCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 28567 0.73 0.255141
Target:  5'- uCGCCGcGCGUgCAGGUgCGCCaucugGugGCCu -3'
miRNA:   3'- -GCGGCuCGCA-GUCCGgGCGG-----CugCGG- -5'
5145 5' -63.7 NC_001798.1 + 149664 0.73 0.255141
Target:  5'- gCGCCGGGuCG-CGGGCCCcggGCuCGGgGCCg -3'
miRNA:   3'- -GCGGCUC-GCaGUCCGGG---CG-GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 24685 0.73 0.260922
Target:  5'- gGCCgGAGCcc--GGCCCGCCG-CGCCc -3'
miRNA:   3'- gCGG-CUCGcaguCCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 93282 0.73 0.263265
Target:  5'- gCGCCGucggGGCGUaccuggcgcgcgccgCGGGCCuCGUgGGCGCCa -3'
miRNA:   3'- -GCGGC----UCGCA---------------GUCCGG-GCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 96916 0.72 0.26681
Target:  5'- cCGCCGGGCuGUCGGacgccGCCCGCgCGcgaGCGCUc -3'
miRNA:   3'- -GCGGCUCG-CAGUC-----CGGGCG-GC---UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3514 0.72 0.272201
Target:  5'- gGCCGccacguGCGcCAGGCCCcaGCCGAagcggccCGCCg -3'
miRNA:   3'- gCGGCu-----CGCaGUCCGGG--CGGCU-------GCGG- -5'
5145 5' -63.7 NC_001798.1 + 40321 0.72 0.272805
Target:  5'- cCGUCGGGCGUCAccgccCCCGCCccCGCCg -3'
miRNA:   3'- -GCGGCUCGCAGUcc---GGGCGGcuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 26199 0.72 0.278908
Target:  5'- gGCCGGGCcgccgccUCGGGCgCgGgCGACGCCa -3'
miRNA:   3'- gCGGCUCGc------AGUCCG-GgCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 87720 0.72 0.278908
Target:  5'- cCGCCGuAGCGcCGGccCCCGCCGGC-CCg -3'
miRNA:   3'- -GCGGC-UCGCaGUCc-GGGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 58686 0.72 0.278908
Target:  5'- cCGCCGc-CGUCAGGgCCGCggCGGCGCg -3'
miRNA:   3'- -GCGGCucGCAGUCCgGGCG--GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 62257 0.72 0.278908
Target:  5'- cCGCCccGAGCcgauccCAGGCCCGCCgGGCgGCCc -3'
miRNA:   3'- -GCGG--CUCGca----GUCCGGGCGG-CUG-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.