miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 5' -55.3 NC_001798.1 + 74902 0.66 0.949995
Target:  5'- cGCUAUUCuaccGGcUUgcccaagcgccGCCGGCCCaCCUGGa -3'
miRNA:   3'- -CGAUAGGu---CCuAA-----------UGGCUGGG-GGGCC- -5'
5147 5' -55.3 NC_001798.1 + 52932 0.66 0.949995
Target:  5'- gGCga-CgAGGAgaccGCCG-CCCUCCGGg -3'
miRNA:   3'- -CGauaGgUCCUaa--UGGCuGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 78344 0.66 0.949995
Target:  5'- aGCUGguccggaCCGGGGUcacccUGCCGugUCCCagcgaGGa -3'
miRNA:   3'- -CGAUa------GGUCCUA-----AUGGCugGGGGg----CC- -5'
5147 5' -55.3 NC_001798.1 + 137123 0.66 0.949995
Target:  5'- --cGUCCAGaacgaACCGcaaccGCCCCCUGGg -3'
miRNA:   3'- cgaUAGGUCcuaa-UGGC-----UGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 34827 0.66 0.949995
Target:  5'- cGCUccgCCGGGGgcccggGCCGGaCCgCCGGg -3'
miRNA:   3'- -CGAua-GGUCCUaa----UGGCUgGGgGGCC- -5'
5147 5' -55.3 NC_001798.1 + 55023 0.66 0.949995
Target:  5'- cCUG-CCGGGAgacGCCccgGACUCCCCGu -3'
miRNA:   3'- cGAUaGGUCCUaa-UGG---CUGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 67234 0.66 0.949582
Target:  5'- --gGUCCuuGGGUUcCCGuggaggaACUCCCCGGa -3'
miRNA:   3'- cgaUAGGu-CCUAAuGGC-------UGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 71405 0.66 0.949582
Target:  5'- gGUgg-CgGGGGUgcCCGcgcggacGCCCCCCGGc -3'
miRNA:   3'- -CGauaGgUCCUAauGGC-------UGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 69844 0.66 0.945762
Target:  5'- --gGUCCGGGccgccgucgGCCGcCCCCCCc- -3'
miRNA:   3'- cgaUAGGUCCuaa------UGGCuGGGGGGcc -5'
5147 5' -55.3 NC_001798.1 + 123798 0.66 0.945762
Target:  5'- ----aCCuGGAagcUGCCucCCCCCCGGa -3'
miRNA:   3'- cgauaGGuCCUa--AUGGcuGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 21777 0.66 0.945762
Target:  5'- uGCg--CgAGGAacgGCCcGCCCCCCGu -3'
miRNA:   3'- -CGauaGgUCCUaa-UGGcUGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 109031 0.66 0.945762
Target:  5'- uGCUccCCGGGccuccgGCCGGCCCCa-GGu -3'
miRNA:   3'- -CGAuaGGUCCuaa---UGGCUGGGGggCC- -5'
5147 5' -55.3 NC_001798.1 + 48773 0.66 0.941299
Target:  5'- --aGUCCucGGGGacGCaCGGCaCCCCCGGc -3'
miRNA:   3'- cgaUAGG--UCCUaaUG-GCUG-GGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 82238 0.66 0.941299
Target:  5'- cGCcGUCCAG----ACCaGCCCCCCGc -3'
miRNA:   3'- -CGaUAGGUCcuaaUGGcUGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 94956 0.66 0.941299
Target:  5'- -aUcgCCGGGucccGCCGuCCCCCCa- -3'
miRNA:   3'- cgAuaGGUCCuaa-UGGCuGGGGGGcc -5'
5147 5' -55.3 NC_001798.1 + 108660 0.66 0.941299
Target:  5'- ----aCCcGGAcgGCCGACgcaacgcgccgCCCCCGGg -3'
miRNA:   3'- cgauaGGuCCUaaUGGCUG-----------GGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 131720 0.66 0.941299
Target:  5'- cGCUGagUCAGGGUUGCCGACUUCgUCa- -3'
miRNA:   3'- -CGAUa-GGUCCUAAUGGCUGGGG-GGcc -5'
5147 5' -55.3 NC_001798.1 + 109109 0.66 0.94084
Target:  5'- cGCUGgacgcccUCCGGcGGgugGCCGGCUaCCCCGa -3'
miRNA:   3'- -CGAU-------AGGUC-CUaa-UGGCUGG-GGGGCc -5'
5147 5' -55.3 NC_001798.1 + 10715 0.66 0.938511
Target:  5'- gGC-AUCCAGGGguuCCGcgGCCCacaguaguuugugggCCCGGg -3'
miRNA:   3'- -CGaUAGGUCCUaauGGC--UGGG---------------GGGCC- -5'
5147 5' -55.3 NC_001798.1 + 3885 0.66 0.936606
Target:  5'- cGCgccCCGGGGgcgggggGCCGGCCCCgggccaCGGc -3'
miRNA:   3'- -CGauaGGUCCUaa-----UGGCUGGGGg-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.