miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 3200 0.66 0.887246
Target:  5'- cCGGCCGGcGCgGaggcGGGCGCgGCGCUc-- -3'
miRNA:   3'- -GCCGGCC-CGgUa---CUUGCG-CGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 132543 0.66 0.887246
Target:  5'- uGGaCGGGUCcgGGGCGCGCuCg--- -3'
miRNA:   3'- gCCgGCCCGGuaCUUGCGCGuGaaac -5'
5149 3' -56.9 NC_001798.1 + 51822 0.66 0.887246
Target:  5'- aCGGgUGGGUCugcgGGACGCGC-CUg-- -3'
miRNA:   3'- -GCCgGCCCGGua--CUUGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 22322 0.66 0.887246
Target:  5'- gGGCCGccGCCAcGGACGCGgACg--- -3'
miRNA:   3'- gCCGGCc-CGGUaCUUGCGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 47828 0.66 0.887246
Target:  5'- aCGGCCccGGCCcc--GCGCGCGCUc-- -3'
miRNA:   3'- -GCCGGc-CCGGuacuUGCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 24840 0.66 0.886564
Target:  5'- uGGCCGGcggcagcgaggccGCCGUGGccgcCGUGCGCgccgUGa -3'
miRNA:   3'- gCCGGCC-------------CGGUACUu---GCGCGUGaa--AC- -5'
5149 3' -56.9 NC_001798.1 + 135534 0.66 0.880324
Target:  5'- -cGCCGGGCCcucgaggcguccGUGcGCGCcGUACUUUc -3'
miRNA:   3'- gcCGGCCCGG------------UACuUGCG-CGUGAAAc -5'
5149 3' -56.9 NC_001798.1 + 122561 0.66 0.880324
Target:  5'- gCGGCCGagguGGCCuucguCGCGCGCa--- -3'
miRNA:   3'- -GCCGGC----CCGGuacuuGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 96917 0.66 0.87962
Target:  5'- -cGCCGGGCUGUcGGACGCcgcccgcgcgcgaGCGCUcUGu -3'
miRNA:   3'- gcCGGCCCGGUA-CUUGCG-------------CGUGAaAC- -5'
5149 3' -56.9 NC_001798.1 + 58985 0.66 0.87962
Target:  5'- gCGGCCGGGC---GAACGCgggggggGCGCg--- -3'
miRNA:   3'- -GCCGGCCCGguaCUUGCG-------CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 56248 0.66 0.876066
Target:  5'- gCGGCCGGGCCcgGccccggaguuaccgcAGCcgacgauaGCGCACc--- -3'
miRNA:   3'- -GCCGGCCCGGuaC---------------UUG--------CGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 150380 0.66 0.873184
Target:  5'- gCGGCgCGGGCCcgGccGCGUccGCGCUc-- -3'
miRNA:   3'- -GCCG-GCCCGGuaCu-UGCG--CGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 73947 0.66 0.873184
Target:  5'- uGGagggGGGCgaGUGGACGCGCGCg--- -3'
miRNA:   3'- gCCgg--CCCGg-UACUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 32003 0.66 0.86583
Target:  5'- cCGcGCCGGGCCccGGACuCGgACUcgGg -3'
miRNA:   3'- -GC-CGGCCCGGuaCUUGcGCgUGAaaC- -5'
5149 3' -56.9 NC_001798.1 + 72851 0.66 0.86583
Target:  5'- gCGGCaCGGGCCccGAGCGgGUg----- -3'
miRNA:   3'- -GCCG-GCCCGGuaCUUGCgCGugaaac -5'
5149 3' -56.9 NC_001798.1 + 16605 0.66 0.86583
Target:  5'- gCGGCCcagGGGCuCGUGAcggACGaCGCGCc--- -3'
miRNA:   3'- -GCCGG---CCCG-GUACU---UGC-GCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 74154 0.66 0.858267
Target:  5'- cCGGCCccuGGGCCAUGcGGC-CGCugUc-- -3'
miRNA:   3'- -GCCGG---CCCGGUAC-UUGcGCGugAaac -5'
5149 3' -56.9 NC_001798.1 + 130092 0.66 0.858267
Target:  5'- gGGCaCaGGCCcgGGGCGuUGCACUcgGg -3'
miRNA:   3'- gCCG-GcCCGGuaCUUGC-GCGUGAaaC- -5'
5149 3' -56.9 NC_001798.1 + 78851 0.66 0.858267
Target:  5'- gCGGCaCGccGGCCGccUGGGgGCGCuCUUUGa -3'
miRNA:   3'- -GCCG-GC--CCGGU--ACUUgCGCGuGAAAC- -5'
5149 3' -56.9 NC_001798.1 + 58878 0.66 0.858267
Target:  5'- gGGucCCGGGCCcgGAACccccggagGCGCGCc--- -3'
miRNA:   3'- gCC--GGCCCGGuaCUUG--------CGCGUGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.