miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 5' -55.2 NC_001798.1 + 121179 1.1 0.003543
Target:  5'- gUCCAAUACGAUCUCACCCGGGACCCGa -3'
miRNA:   3'- -AGGUUAUGCUAGAGUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 59241 0.76 0.48134
Target:  5'- gUCCcc-GCGAcacaUCccgCACCCGGGGCCCGa -3'
miRNA:   3'- -AGGuuaUGCU----AGa--GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 115818 0.75 0.509937
Target:  5'- gUCCGGUgGCGuuUCgugaCGCCCGGGGCCUGg -3'
miRNA:   3'- -AGGUUA-UGCu-AGa---GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 82300 0.74 0.559057
Target:  5'- -gCGGUugGGUCgUGCCCGGaGGCCCGg -3'
miRNA:   3'- agGUUAugCUAGaGUGGGCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 103493 0.74 0.589171
Target:  5'- gUCCAggGCcagCUCGCCCGGGucCCCGc -3'
miRNA:   3'- -AGGUuaUGcuaGAGUGGGCCCu-GGGC- -5'
5149 5' -55.2 NC_001798.1 + 6960 0.73 0.609411
Target:  5'- cCCuuGAUACGAUCUCGucgaCCGGGGCUCc -3'
miRNA:   3'- aGG--UUAUGCUAGAGUg---GGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 123447 0.73 0.61956
Target:  5'- cCCGAcGCGcgCgcccccgACCCGGGGCCCGa -3'
miRNA:   3'- aGGUUaUGCuaGag-----UGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 118368 0.72 0.680376
Target:  5'- cUCCGGgggACuGAuUCUCACCUGGGGCUCc -3'
miRNA:   3'- -AGGUUa--UG-CU-AGAGUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 24698 0.71 0.710369
Target:  5'- cCCGccGCGcccccgCGCCCGGGGCCCGc -3'
miRNA:   3'- aGGUuaUGCuaga--GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 5717 0.71 0.757977
Target:  5'- --aAGUGCGAgcgCUggcgcccUGCCCGGGGCCCGc -3'
miRNA:   3'- aggUUAUGCUa--GA-------GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 4115 0.7 0.768341
Target:  5'- cCCuggGCGggCUCGgCCGGGGCgCCGc -3'
miRNA:   3'- aGGuuaUGCuaGAGUgGGCCCUG-GGC- -5'
5149 5' -55.2 NC_001798.1 + 46647 0.69 0.813451
Target:  5'- cCCGAgucgACGAgaccgagcaUCACgUGGGGCCCGg -3'
miRNA:   3'- aGGUUa---UGCUag-------AGUGgGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 153397 0.69 0.820319
Target:  5'- aCCGGUcGCGGUCggcccgcucgcgCGCCCaGGACCCc -3'
miRNA:   3'- aGGUUA-UGCUAGa-----------GUGGGcCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 5855 0.69 0.853743
Target:  5'- --aAGUGCGAgcaCUggcgcccUGCCCGGGGCCCGc -3'
miRNA:   3'- aggUUAUGCUa--GA-------GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 22371 0.68 0.861409
Target:  5'- -aUAAUGCGGUUcCACCUGGGGgcggaacCCCGg -3'
miRNA:   3'- agGUUAUGCUAGaGUGGGCCCU-------GGGC- -5'
5149 5' -55.2 NC_001798.1 + 75344 0.68 0.862164
Target:  5'- cCC--UGCGGUCgccgUACCCGGcGcACCCGg -3'
miRNA:   3'- aGGuuAUGCUAGa---GUGGGCC-C-UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 34882 0.68 0.862164
Target:  5'- gCCGG-GCGG-CU-ACCCGGGACCCc -3'
miRNA:   3'- aGGUUaUGCUaGAgUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 34814 0.68 0.862164
Target:  5'- cCCGGggccccCGcgCUcCGCCgGGGGCCCGg -3'
miRNA:   3'- aGGUUau----GCuaGA-GUGGgCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 147204 0.68 0.883852
Target:  5'- cCCG--GCGGUCcgGCCCGGGccCCCGg -3'
miRNA:   3'- aGGUuaUGCUAGagUGGGCCCu-GGGC- -5'
5149 5' -55.2 NC_001798.1 + 107618 0.68 0.883852
Target:  5'- gUCCuggauUACGAUCagUCGCCCgucGGGugUCGa -3'
miRNA:   3'- -AGGuu---AUGCUAG--AGUGGG---CCCugGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.