miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 5' -55.2 NC_001798.1 + 4115 0.7 0.768341
Target:  5'- cCCuggGCGggCUCGgCCGGGGCgCCGc -3'
miRNA:   3'- aGGuuaUGCuaGAGUgGGCCCUG-GGC- -5'
5149 5' -55.2 NC_001798.1 + 5717 0.71 0.757977
Target:  5'- --aAGUGCGAgcgCUggcgcccUGCCCGGGGCCCGc -3'
miRNA:   3'- aggUUAUGCUa--GA-------GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 5855 0.69 0.853743
Target:  5'- --aAGUGCGAgcaCUggcgcccUGCCCGGGGCCCGc -3'
miRNA:   3'- aggUUAUGCUa--GA-------GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 6960 0.73 0.609411
Target:  5'- cCCuuGAUACGAUCUCGucgaCCGGGGCUCc -3'
miRNA:   3'- aGG--UUAUGCUAGAGUg---GGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 7369 0.66 0.936251
Target:  5'- uUCC---ACGAUCUCccagagaACCCaGGGuCCCGc -3'
miRNA:   3'- -AGGuuaUGCUAGAG-------UGGG-CCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 9432 0.66 0.945915
Target:  5'- cUCCGG-AgGGUCcUGCCacaGGGACCCGu -3'
miRNA:   3'- -AGGUUaUgCUAGaGUGGg--CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 14545 0.66 0.941441
Target:  5'- gCCAAaaguUGCGcAUCUCGagggcCCCGGGACaCGu -3'
miRNA:   3'- aGGUU----AUGC-UAGAGU-----GGGCCCUGgGC- -5'
5149 5' -55.2 NC_001798.1 + 19278 0.67 0.903563
Target:  5'- aCCAAUACGG-CgugguggUGCCCGGcGACCgGg -3'
miRNA:   3'- aGGUUAUGCUaGa------GUGGGCC-CUGGgC- -5'
5149 5' -55.2 NC_001798.1 + 22371 0.68 0.861409
Target:  5'- -aUAAUGCGGUUcCACCUGGGGgcggaacCCCGg -3'
miRNA:   3'- agGUUAUGCUAGaGUGGGCCCU-------GGGC- -5'
5149 5' -55.2 NC_001798.1 + 24698 0.71 0.710369
Target:  5'- cCCGccGCGcccccgCGCCCGGGGCCCGc -3'
miRNA:   3'- aGGUuaUGCuaga--GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 29004 0.66 0.945915
Target:  5'- gCCAAccGCGcgC-CGCCgCGcGGGCCCGg -3'
miRNA:   3'- aGGUUa-UGCuaGaGUGG-GC-CCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 32355 0.66 0.941441
Target:  5'- gCCAcgcggaggGCGGcCccgaGCCCGGGGCCCGc -3'
miRNA:   3'- aGGUua------UGCUaGag--UGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 34814 0.68 0.862164
Target:  5'- cCCGGggccccCGcgCUcCGCCgGGGGCCCGg -3'
miRNA:   3'- aGGUUau----GCuaGA-GUGGgCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 34882 0.68 0.862164
Target:  5'- gCCGG-GCGG-CU-ACCCGGGACCCc -3'
miRNA:   3'- aGGUUaUGCUaGAgUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 39038 0.67 0.926618
Target:  5'- gCCA--GCG-UCUCAUCCGcGGACgCCa -3'
miRNA:   3'- aGGUuaUGCuAGAGUGGGC-CCUG-GGc -5'
5149 5' -55.2 NC_001798.1 + 45141 0.68 0.890647
Target:  5'- cUCGAgaggcugGCGcgCcacCACCCGGGACUCGa -3'
miRNA:   3'- aGGUUa------UGCuaGa--GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 45386 0.67 0.897219
Target:  5'- cUCCAccuCGGcUCUgGCCggaGGGACCCGc -3'
miRNA:   3'- -AGGUuauGCU-AGAgUGGg--CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 46647 0.69 0.813451
Target:  5'- cCCGAgucgACGAgaccgagcaUCACgUGGGGCCCGg -3'
miRNA:   3'- aGGUUa---UGCUag-------AGUGgGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 51138 0.66 0.941441
Target:  5'- gCCGGgaggcccGCGGUCaC-CCCGGGuCCCGa -3'
miRNA:   3'- aGGUUa------UGCUAGaGuGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 59241 0.76 0.48134
Target:  5'- gUCCcc-GCGAcacaUCccgCACCCGGGGCCCGa -3'
miRNA:   3'- -AGGuuaUGCU----AGa--GUGGGCCCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.