miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 5' -55.2 NC_001798.1 + 154097 0.66 0.945915
Target:  5'- gCCGGggcGCGGcCggCGCCgGGGACCCc -3'
miRNA:   3'- aGGUUa--UGCUaGa-GUGGgCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 153397 0.69 0.820319
Target:  5'- aCCGGUcGCGGUCggcccgcucgcgCGCCCaGGACCCc -3'
miRNA:   3'- aGGUUA-UGCUAGa-----------GUGGGcCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 152232 0.67 0.909677
Target:  5'- gCCGcgGCGG-C-CGCUCGGGGCCgGg -3'
miRNA:   3'- aGGUuaUGCUaGaGUGGGCCCUGGgC- -5'
5149 5' -55.2 NC_001798.1 + 150490 0.66 0.950157
Target:  5'- cCCGAcgacugugGCaGAcCUCccccCCCGGGGCCCGa -3'
miRNA:   3'- aGGUUa-------UG-CUaGAGu---GGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 147204 0.68 0.883852
Target:  5'- cCCG--GCGGUCcgGCCCGGGccCCCGg -3'
miRNA:   3'- aGGUuaUGCUAGagUGGGCCCu-GGGC- -5'
5149 5' -55.2 NC_001798.1 + 132081 0.66 0.950157
Target:  5'- uUUCGGcGCGccguuGUCUguuucucccgCGCCUGGGGCCCGa -3'
miRNA:   3'- -AGGUUaUGC-----UAGA----------GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 129665 0.67 0.897219
Target:  5'- cCCGacGUGCGcgUggUCACCCGGGcGCCgGg -3'
miRNA:   3'- aGGU--UAUGCuaG--AGUGGGCCC-UGGgC- -5'
5149 5' -55.2 NC_001798.1 + 128931 0.66 0.936735
Target:  5'- cCCGgcGUGCGcuacuUCgCGCCCGGGcgcguuccggGCCCGg -3'
miRNA:   3'- aGGU--UAUGCu----AGaGUGGGCCC----------UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 128814 0.67 0.903563
Target:  5'- gCCaAGUACGcgUUCGacCCCGcGGACCCc -3'
miRNA:   3'- aGG-UUAUGCuaGAGU--GGGC-CCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 123447 0.73 0.61956
Target:  5'- cCCGAcGCGcgCgcccccgACCCGGGGCCCGa -3'
miRNA:   3'- aGGUUaUGCuaGag-----UGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 121179 1.1 0.003543
Target:  5'- gUCCAAUACGAUCUCACCCGGGACCCGa -3'
miRNA:   3'- -AGGUUAUGCUAGAGUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 118368 0.72 0.680376
Target:  5'- cUCCGGgggACuGAuUCUCACCUGGGGCUCc -3'
miRNA:   3'- -AGGUUa--UG-CU-AGAGUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 115818 0.75 0.509937
Target:  5'- gUCCGGUgGCGuuUCgugaCGCCCGGGGCCUGg -3'
miRNA:   3'- -AGGUUA-UGCu-AGa---GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 108389 0.66 0.950157
Target:  5'- aCCAcgGCcgaGUUUC-CUCGGGACCCc -3'
miRNA:   3'- aGGUuaUGc--UAGAGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 107618 0.68 0.883852
Target:  5'- gUCCuggauUACGAUCagUCGCCCgucGGGugUCGa -3'
miRNA:   3'- -AGGuu---AUGCUAG--AGUGGG---CCCugGGC- -5'
5149 5' -55.2 NC_001798.1 + 106076 0.67 0.903563
Target:  5'- gCCuuUGCGGUCUgGCggucgCGGcGACCCGg -3'
miRNA:   3'- aGGuuAUGCUAGAgUGg----GCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 103493 0.74 0.589171
Target:  5'- gUCCAggGCcagCUCGCCCGGGucCCCGc -3'
miRNA:   3'- -AGGUuaUGcuaGAGUGGGCCCu-GGGC- -5'
5149 5' -55.2 NC_001798.1 + 102775 0.66 0.945915
Target:  5'- cUCGcgGCGGgggaugugUCauggCACCCGGGGCgCCGg -3'
miRNA:   3'- aGGUuaUGCU--------AGa---GUGGGCCCUG-GGC- -5'
5149 5' -55.2 NC_001798.1 + 102412 0.67 0.915559
Target:  5'- aCCAGcgcgGCGAUCUgGgCCuccaggggacuGGGGCCCGc -3'
miRNA:   3'- aGGUUa---UGCUAGAgUgGG-----------CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 102237 0.66 0.939587
Target:  5'- cUCGggGCGGgcCUCGCCCGGGuaauacgggaaguCCCGg -3'
miRNA:   3'- aGGUuaUGCUa-GAGUGGGCCCu------------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.