miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 5' -55.2 NC_001798.1 + 59780 0.66 0.945915
Target:  5'- uUCCGGgaacGCGggCggUACCCGGG-CCUGg -3'
miRNA:   3'- -AGGUUa---UGCuaGa-GUGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 62261 0.66 0.941441
Target:  5'- cCCGAgcCGAUCccaggccCGCCgGGcGGCCCGg -3'
miRNA:   3'- aGGUUauGCUAGa------GUGGgCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 67480 0.67 0.903563
Target:  5'- gCUAAUGCGGUag-GCCgCGGGGCCgGg -3'
miRNA:   3'- aGGUUAUGCUAgagUGG-GCCCUGGgC- -5'
5149 5' -55.2 NC_001798.1 + 69145 0.66 0.941441
Target:  5'- gCCAGUcgcuCGGUCUgcCGgCCGGGcggaGCCCGa -3'
miRNA:   3'- aGGUUAu---GCUAGA--GUgGGCCC----UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 69883 0.66 0.936735
Target:  5'- cCCAcc-CGAcagCACCCGGG-CCCGa -3'
miRNA:   3'- aGGUuauGCUagaGUGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 72491 0.67 0.915559
Target:  5'- gCCc--ACGAg--CGCCUGGGGCCCu -3'
miRNA:   3'- aGGuuaUGCUagaGUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 75344 0.68 0.862164
Target:  5'- cCC--UGCGGUCgccgUACCCGGcGcACCCGg -3'
miRNA:   3'- aGGuuAUGCUAGa---GUGGGCC-C-UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 82139 0.67 0.914401
Target:  5'- cUCCcucccc-UCUC-CCCGGGACCCa -3'
miRNA:   3'- -AGGuuaugcuAGAGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 82300 0.74 0.559057
Target:  5'- -gCGGUugGGUCgUGCCCGGaGGCCCGg -3'
miRNA:   3'- agGUUAugCUAGaGUGGGCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 84006 0.66 0.945915
Target:  5'- aUCCGccgcGUGCGAacggCgUC-CUCGGGGCCCa -3'
miRNA:   3'- -AGGU----UAUGCUa---G-AGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 87923 0.68 0.883852
Target:  5'- cCCGG-GCGAUggcgUACCCGGGAUCCu -3'
miRNA:   3'- aGGUUaUGCUAga--GUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 91490 0.67 0.920652
Target:  5'- gCCGAUGuucccccCGGcUCUUACCgGcGGACCCGc -3'
miRNA:   3'- aGGUUAU-------GCU-AGAGUGGgC-CCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 102237 0.66 0.939587
Target:  5'- cUCGggGCGGgcCUCGCCCGGGuaauacgggaaguCCCGg -3'
miRNA:   3'- aGGUuaUGCUa-GAGUGGGCCCu------------GGGC- -5'
5149 5' -55.2 NC_001798.1 + 102412 0.67 0.915559
Target:  5'- aCCAGcgcgGCGAUCUgGgCCuccaggggacuGGGGCCCGc -3'
miRNA:   3'- aGGUUa---UGCUAGAgUgGG-----------CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 102775 0.66 0.945915
Target:  5'- cUCGcgGCGGgggaugugUCauggCACCCGGGGCgCCGg -3'
miRNA:   3'- aGGUuaUGCU--------AGa---GUGGGCCCUG-GGC- -5'
5149 5' -55.2 NC_001798.1 + 103493 0.74 0.589171
Target:  5'- gUCCAggGCcagCUCGCCCGGGucCCCGc -3'
miRNA:   3'- -AGGUuaUGcuaGAGUGGGCCCu-GGGC- -5'
5149 5' -55.2 NC_001798.1 + 106076 0.67 0.903563
Target:  5'- gCCuuUGCGGUCUgGCggucgCGGcGACCCGg -3'
miRNA:   3'- aGGuuAUGCUAGAgUGg----GCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 107618 0.68 0.883852
Target:  5'- gUCCuggauUACGAUCagUCGCCCgucGGGugUCGa -3'
miRNA:   3'- -AGGuu---AUGCUAG--AGUGGG---CCCugGGC- -5'
5149 5' -55.2 NC_001798.1 + 108389 0.66 0.950157
Target:  5'- aCCAcgGCcgaGUUUC-CUCGGGACCCc -3'
miRNA:   3'- aGGUuaUGc--UAGAGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 115818 0.75 0.509937
Target:  5'- gUCCGGUgGCGuuUCgugaCGCCCGGGGCCUGg -3'
miRNA:   3'- -AGGUUA-UGCu-AGa---GUGGGCCCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.