miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 5' -55.2 NC_001798.1 + 87923 0.68 0.883852
Target:  5'- cCCGG-GCGAUggcgUACCCGGGAUCCu -3'
miRNA:   3'- aGGUUaUGCUAga--GUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 45141 0.68 0.890647
Target:  5'- cUCGAgaggcugGCGcgCcacCACCCGGGACUCGa -3'
miRNA:   3'- aGGUUa------UGCuaGa--GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 45386 0.67 0.897219
Target:  5'- cUCCAccuCGGcUCUgGCCggaGGGACCCGc -3'
miRNA:   3'- -AGGUuauGCU-AGAgUGGg--CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 129665 0.67 0.897219
Target:  5'- cCCGacGUGCGcgUggUCACCCGGGcGCCgGg -3'
miRNA:   3'- aGGU--UAUGCuaG--AGUGGGCCC-UGGgC- -5'
5149 5' -55.2 NC_001798.1 + 19278 0.67 0.903563
Target:  5'- aCCAAUACGG-CgugguggUGCCCGGcGACCgGg -3'
miRNA:   3'- aGGUUAUGCUaGa------GUGGGCC-CUGGgC- -5'
5149 5' -55.2 NC_001798.1 + 106076 0.67 0.903563
Target:  5'- gCCuuUGCGGUCUgGCggucgCGGcGACCCGg -3'
miRNA:   3'- aGGuuAUGCUAGAgUGg----GCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 67480 0.67 0.903563
Target:  5'- gCUAAUGCGGUag-GCCgCGGGGCCgGg -3'
miRNA:   3'- aGGUUAUGCUAgagUGG-GCCCUGGgC- -5'
5149 5' -55.2 NC_001798.1 + 128814 0.67 0.903563
Target:  5'- gCCaAGUACGcgUUCGacCCCGcGGACCCc -3'
miRNA:   3'- aGG-UUAUGCuaGAGU--GGGC-CCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 152232 0.67 0.909677
Target:  5'- gCCGcgGCGG-C-CGCUCGGGGCCgGg -3'
miRNA:   3'- aGGUuaUGCUaGaGUGGGCCCUGGgC- -5'
5149 5' -55.2 NC_001798.1 + 82139 0.67 0.914401
Target:  5'- cUCCcucccc-UCUC-CCCGGGACCCa -3'
miRNA:   3'- -AGGuuaugcuAGAGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 102412 0.67 0.915559
Target:  5'- aCCAGcgcgGCGAUCUgGgCCuccaggggacuGGGGCCCGc -3'
miRNA:   3'- aGGUUa---UGCUAGAgUgGG-----------CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 72491 0.67 0.915559
Target:  5'- gCCc--ACGAg--CGCCUGGGGCCCu -3'
miRNA:   3'- aGGuuaUGCUagaGUGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 91490 0.67 0.920652
Target:  5'- gCCGAUGuucccccCGGcUCUUACCgGcGGACCCGc -3'
miRNA:   3'- aGGUUAU-------GCU-AGAGUGGgC-CCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 39038 0.67 0.926618
Target:  5'- gCCA--GCG-UCUCAUCCGcGGACgCCa -3'
miRNA:   3'- aGGUuaUGCuAGAGUGGGC-CCUG-GGc -5'
5149 5' -55.2 NC_001798.1 + 7369 0.66 0.936251
Target:  5'- uUCC---ACGAUCUCccagagaACCCaGGGuCCCGc -3'
miRNA:   3'- -AGGuuaUGCUAGAG-------UGGG-CCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 69883 0.66 0.936735
Target:  5'- cCCAcc-CGAcagCACCCGGG-CCCGa -3'
miRNA:   3'- aGGUuauGCUagaGUGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 128931 0.66 0.936735
Target:  5'- cCCGgcGUGCGcuacuUCgCGCCCGGGcgcguuccggGCCCGg -3'
miRNA:   3'- aGGU--UAUGCu----AGaGUGGGCCC----------UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 102237 0.66 0.939587
Target:  5'- cUCGggGCGGgcCUCGCCCGGGuaauacgggaaguCCCGg -3'
miRNA:   3'- aGGUuaUGCUa-GAGUGGGCCCu------------GGGC- -5'
5149 5' -55.2 NC_001798.1 + 14545 0.66 0.941441
Target:  5'- gCCAAaaguUGCGcAUCUCGagggcCCCGGGACaCGu -3'
miRNA:   3'- aGGUU----AUGC-UAGAGU-----GGGCCCUGgGC- -5'
5149 5' -55.2 NC_001798.1 + 32355 0.66 0.941441
Target:  5'- gCCAcgcggaggGCGGcCccgaGCCCGGGGCCCGc -3'
miRNA:   3'- aGGUua------UGCUaGag--UGGGCCCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.