Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5149 | 5' | -55.2 | NC_001798.1 | + | 72491 | 0.67 | 0.915559 |
Target: 5'- gCCc--ACGAg--CGCCUGGGGCCCu -3' miRNA: 3'- aGGuuaUGCUagaGUGGGCCCUGGGc -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 102412 | 0.67 | 0.915559 |
Target: 5'- aCCAGcgcgGCGAUCUgGgCCuccaggggacuGGGGCCCGc -3' miRNA: 3'- aGGUUa---UGCUAGAgUgGG-----------CCCUGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 82139 | 0.67 | 0.914401 |
Target: 5'- cUCCcucccc-UCUC-CCCGGGACCCa -3' miRNA: 3'- -AGGuuaugcuAGAGuGGGCCCUGGGc -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 152232 | 0.67 | 0.909677 |
Target: 5'- gCCGcgGCGG-C-CGCUCGGGGCCgGg -3' miRNA: 3'- aGGUuaUGCUaGaGUGGGCCCUGGgC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 67480 | 0.67 | 0.903563 |
Target: 5'- gCUAAUGCGGUag-GCCgCGGGGCCgGg -3' miRNA: 3'- aGGUUAUGCUAgagUGG-GCCCUGGgC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 106076 | 0.67 | 0.903563 |
Target: 5'- gCCuuUGCGGUCUgGCggucgCGGcGACCCGg -3' miRNA: 3'- aGGuuAUGCUAGAgUGg----GCC-CUGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 128814 | 0.67 | 0.903563 |
Target: 5'- gCCaAGUACGcgUUCGacCCCGcGGACCCc -3' miRNA: 3'- aGG-UUAUGCuaGAGU--GGGC-CCUGGGc -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 19278 | 0.67 | 0.903563 |
Target: 5'- aCCAAUACGG-CgugguggUGCCCGGcGACCgGg -3' miRNA: 3'- aGGUUAUGCUaGa------GUGGGCC-CUGGgC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 129665 | 0.67 | 0.897219 |
Target: 5'- cCCGacGUGCGcgUggUCACCCGGGcGCCgGg -3' miRNA: 3'- aGGU--UAUGCuaG--AGUGGGCCC-UGGgC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 45386 | 0.67 | 0.897219 |
Target: 5'- cUCCAccuCGGcUCUgGCCggaGGGACCCGc -3' miRNA: 3'- -AGGUuauGCU-AGAgUGGg--CCCUGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 45141 | 0.68 | 0.890647 |
Target: 5'- cUCGAgaggcugGCGcgCcacCACCCGGGACUCGa -3' miRNA: 3'- aGGUUa------UGCuaGa--GUGGGCCCUGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 107618 | 0.68 | 0.883852 |
Target: 5'- gUCCuggauUACGAUCagUCGCCCgucGGGugUCGa -3' miRNA: 3'- -AGGuu---AUGCUAG--AGUGGG---CCCugGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 147204 | 0.68 | 0.883852 |
Target: 5'- cCCG--GCGGUCcgGCCCGGGccCCCGg -3' miRNA: 3'- aGGUuaUGCUAGagUGGGCCCu-GGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 87923 | 0.68 | 0.883852 |
Target: 5'- cCCGG-GCGAUggcgUACCCGGGAUCCu -3' miRNA: 3'- aGGUUaUGCUAga--GUGGGCCCUGGGc -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 75344 | 0.68 | 0.862164 |
Target: 5'- cCC--UGCGGUCgccgUACCCGGcGcACCCGg -3' miRNA: 3'- aGGuuAUGCUAGa---GUGGGCC-C-UGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 34882 | 0.68 | 0.862164 |
Target: 5'- gCCGG-GCGG-CU-ACCCGGGACCCc -3' miRNA: 3'- aGGUUaUGCUaGAgUGGGCCCUGGGc -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 34814 | 0.68 | 0.862164 |
Target: 5'- cCCGGggccccCGcgCUcCGCCgGGGGCCCGg -3' miRNA: 3'- aGGUUau----GCuaGA-GUGGgCCCUGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 22371 | 0.68 | 0.861409 |
Target: 5'- -aUAAUGCGGUUcCACCUGGGGgcggaacCCCGg -3' miRNA: 3'- agGUUAUGCUAGaGUGGGCCCU-------GGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 5855 | 0.69 | 0.853743 |
Target: 5'- --aAGUGCGAgcaCUggcgcccUGCCCGGGGCCCGc -3' miRNA: 3'- aggUUAUGCUa--GA-------GUGGGCCCUGGGC- -5' |
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5149 | 5' | -55.2 | NC_001798.1 | + | 153397 | 0.69 | 0.820319 |
Target: 5'- aCCGGUcGCGGUCggcccgcucgcgCGCCCaGGACCCc -3' miRNA: 3'- aGGUUA-UGCUAGa-----------GUGGGcCCUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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