Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5151 | 3' | -62.1 | NC_001798.1 | + | 76608 | 0.66 | 0.665696 |
Target: 5'- -gGCGGG-CUGUCCCCCGAg------ -3' miRNA: 3'- agCGCCCgGACGGGGGGCUacuagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 74631 | 0.66 | 0.65392 |
Target: 5'- cUG-GGGCCgaccgGCCCCCCGAggccccccggggGGcCUCg -3' miRNA: 3'- aGCgCCCGGa----CGGGGGGCUa-----------CUaGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 46410 | 0.66 | 0.646057 |
Target: 5'- -gGCaGGGCCaccGcCCCCCCGgcGGUCg- -3' miRNA: 3'- agCG-CCCGGa--C-GGGGGGCuaCUAGag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 59799 | 0.66 | 0.646057 |
Target: 5'- aCcCGGGCCUGgCCCUCGAggccuUCUUc -3' miRNA: 3'- aGcGCCCGGACgGGGGGCUacu--AGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 36396 | 0.66 | 0.645074 |
Target: 5'- gCGCGGcGCCgggGCCCCCCugccgggcggggcGGUGGg--- -3' miRNA: 3'- aGCGCC-CGGa--CGGGGGG-------------CUACUagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 87972 | 0.66 | 0.645074 |
Target: 5'- cUUGCGGGgCUuggacgcGCCUCCCGGggGGUCg- -3' miRNA: 3'- -AGCGCCCgGA-------CGGGGGGCUa-CUAGag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 138404 | 0.66 | 0.636219 |
Target: 5'- gCGCGGcGCCaGCCaCCCCGcg---CUCg -3' miRNA: 3'- aGCGCC-CGGaCGG-GGGGCuacuaGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 92131 | 0.66 | 0.626378 |
Target: 5'- aCGCGcGGCCUcccccGUcugCCCCCGGUcGUCUUg -3' miRNA: 3'- aGCGC-CCGGA-----CG---GGGGGCUAcUAGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 25099 | 0.66 | 0.626378 |
Target: 5'- -gGCGGcGCCccgcGCCCCCCGAaGAa--- -3' miRNA: 3'- agCGCC-CGGa---CGGGGGGCUaCUagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 95017 | 0.66 | 0.606714 |
Target: 5'- gCGCGGGCCUggaggccgggGCCCgcgcgCUGAUGGaCUCc -3' miRNA: 3'- aGCGCCCGGA----------CGGGg----GGCUACUaGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 55084 | 0.67 | 0.596905 |
Target: 5'- -gGCGGGUCUGCCCUCU-----UCUCc -3' miRNA: 3'- agCGCCCGGACGGGGGGcuacuAGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 154516 | 0.67 | 0.58712 |
Target: 5'- cCGCGGGgCUGCCuUCCCGcgGGc--- -3' miRNA: 3'- aGCGCCCgGACGG-GGGGCuaCUagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 178 | 0.67 | 0.58712 |
Target: 5'- cCGCGGGgCUGCCuUCCCGcgGGc--- -3' miRNA: 3'- aGCGCCCgGACGG-GGGGCuaCUagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 25713 | 0.67 | 0.58712 |
Target: 5'- -gGCGGGCaacuggaccgGCgCCCCCGAc-GUCUCg -3' miRNA: 3'- agCGCCCGga--------CG-GGGGGCUacUAGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 11638 | 0.67 | 0.585167 |
Target: 5'- gCGCGGGCguccCUGUgUCCCCGGgggcgggggucgGGUCUCg -3' miRNA: 3'- aGCGCCCG----GACG-GGGGGCUa-----------CUAGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 38426 | 0.67 | 0.577366 |
Target: 5'- -aGCGGGCCgggccgggGCCCCacauuuauCCGGUGgGUCaUCg -3' miRNA: 3'- agCGCCCGGa-------CGGGG--------GGCUAC-UAG-AG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 52621 | 0.67 | 0.577366 |
Target: 5'- -gGCGGGUCgacgGCCCCCgaGGUGggCa- -3' miRNA: 3'- agCGCCCGGa---CGGGGGg-CUACuaGag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 124085 | 0.67 | 0.577366 |
Target: 5'- -gGCGGcGCCUGCgCCCCGAcGGc--- -3' miRNA: 3'- agCGCC-CGGACGgGGGGCUaCUagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 28820 | 0.67 | 0.577366 |
Target: 5'- cCGCGGGCCcggGCCgUCgGgcGGUCUa -3' miRNA: 3'- aGCGCCCGGa--CGGgGGgCuaCUAGAg -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 2449 | 0.67 | 0.567647 |
Target: 5'- -gGCGGcGCCaGCCgCCCUGcgGGUCg- -3' miRNA: 3'- agCGCC-CGGaCGG-GGGGCuaCUAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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