miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 3' -62.1 NC_001798.1 + 76608 0.66 0.665696
Target:  5'- -gGCGGG-CUGUCCCCCGAg------ -3'
miRNA:   3'- agCGCCCgGACGGGGGGCUacuagag -5'
5151 3' -62.1 NC_001798.1 + 74631 0.66 0.65392
Target:  5'- cUG-GGGCCgaccgGCCCCCCGAggccccccggggGGcCUCg -3'
miRNA:   3'- aGCgCCCGGa----CGGGGGGCUa-----------CUaGAG- -5'
5151 3' -62.1 NC_001798.1 + 46410 0.66 0.646057
Target:  5'- -gGCaGGGCCaccGcCCCCCCGgcGGUCg- -3'
miRNA:   3'- agCG-CCCGGa--C-GGGGGGCuaCUAGag -5'
5151 3' -62.1 NC_001798.1 + 59799 0.66 0.646057
Target:  5'- aCcCGGGCCUGgCCCUCGAggccuUCUUc -3'
miRNA:   3'- aGcGCCCGGACgGGGGGCUacu--AGAG- -5'
5151 3' -62.1 NC_001798.1 + 87972 0.66 0.645074
Target:  5'- cUUGCGGGgCUuggacgcGCCUCCCGGggGGUCg- -3'
miRNA:   3'- -AGCGCCCgGA-------CGGGGGGCUa-CUAGag -5'
5151 3' -62.1 NC_001798.1 + 36396 0.66 0.645074
Target:  5'- gCGCGGcGCCgggGCCCCCCugccgggcggggcGGUGGg--- -3'
miRNA:   3'- aGCGCC-CGGa--CGGGGGG-------------CUACUagag -5'
5151 3' -62.1 NC_001798.1 + 138404 0.66 0.636219
Target:  5'- gCGCGGcGCCaGCCaCCCCGcg---CUCg -3'
miRNA:   3'- aGCGCC-CGGaCGG-GGGGCuacuaGAG- -5'
5151 3' -62.1 NC_001798.1 + 92131 0.66 0.626378
Target:  5'- aCGCGcGGCCUcccccGUcugCCCCCGGUcGUCUUg -3'
miRNA:   3'- aGCGC-CCGGA-----CG---GGGGGCUAcUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 25099 0.66 0.626378
Target:  5'- -gGCGGcGCCccgcGCCCCCCGAaGAa--- -3'
miRNA:   3'- agCGCC-CGGa---CGGGGGGCUaCUagag -5'
5151 3' -62.1 NC_001798.1 + 95017 0.66 0.606714
Target:  5'- gCGCGGGCCUggaggccgggGCCCgcgcgCUGAUGGaCUCc -3'
miRNA:   3'- aGCGCCCGGA----------CGGGg----GGCUACUaGAG- -5'
5151 3' -62.1 NC_001798.1 + 55084 0.67 0.596905
Target:  5'- -gGCGGGUCUGCCCUCU-----UCUCc -3'
miRNA:   3'- agCGCCCGGACGGGGGGcuacuAGAG- -5'
5151 3' -62.1 NC_001798.1 + 154516 0.67 0.58712
Target:  5'- cCGCGGGgCUGCCuUCCCGcgGGc--- -3'
miRNA:   3'- aGCGCCCgGACGG-GGGGCuaCUagag -5'
5151 3' -62.1 NC_001798.1 + 178 0.67 0.58712
Target:  5'- cCGCGGGgCUGCCuUCCCGcgGGc--- -3'
miRNA:   3'- aGCGCCCgGACGG-GGGGCuaCUagag -5'
5151 3' -62.1 NC_001798.1 + 25713 0.67 0.58712
Target:  5'- -gGCGGGCaacuggaccgGCgCCCCCGAc-GUCUCg -3'
miRNA:   3'- agCGCCCGga--------CG-GGGGGCUacUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 11638 0.67 0.585167
Target:  5'- gCGCGGGCguccCUGUgUCCCCGGgggcgggggucgGGUCUCg -3'
miRNA:   3'- aGCGCCCG----GACG-GGGGGCUa-----------CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 28820 0.67 0.577366
Target:  5'- cCGCGGGCCcggGCCgUCgGgcGGUCUa -3'
miRNA:   3'- aGCGCCCGGa--CGGgGGgCuaCUAGAg -5'
5151 3' -62.1 NC_001798.1 + 124085 0.67 0.577366
Target:  5'- -gGCGGcGCCUGCgCCCCGAcGGc--- -3'
miRNA:   3'- agCGCC-CGGACGgGGGGCUaCUagag -5'
5151 3' -62.1 NC_001798.1 + 52621 0.67 0.577366
Target:  5'- -gGCGGGUCgacgGCCCCCgaGGUGggCa- -3'
miRNA:   3'- agCGCCCGGa---CGGGGGg-CUACuaGag -5'
5151 3' -62.1 NC_001798.1 + 38426 0.67 0.577366
Target:  5'- -aGCGGGCCgggccgggGCCCCacauuuauCCGGUGgGUCaUCg -3'
miRNA:   3'- agCGCCCGGa-------CGGGG--------GGCUAC-UAG-AG- -5'
5151 3' -62.1 NC_001798.1 + 25874 0.67 0.567647
Target:  5'- cCGCGGaCUgGCCCgCCGAcgggcccgUGGUCUCg -3'
miRNA:   3'- aGCGCCcGGaCGGGgGGCU--------ACUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.