miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 3' -62.1 NC_001798.1 + 46410 0.66 0.646057
Target:  5'- -gGCaGGGCCaccGcCCCCCCGgcGGUCg- -3'
miRNA:   3'- agCG-CCCGGa--C-GGGGGGCuaCUAGag -5'
5151 3' -62.1 NC_001798.1 + 52621 0.67 0.577366
Target:  5'- -gGCGGGUCgacgGCCCCCgaGGUGggCa- -3'
miRNA:   3'- agCGCCCGGa---CGGGGGg-CUACuaGag -5'
5151 3' -62.1 NC_001798.1 + 55084 0.67 0.596905
Target:  5'- -gGCGGGUCUGCCCUCU-----UCUCc -3'
miRNA:   3'- agCGCCCGGACGGGGGGcuacuAGAG- -5'
5151 3' -62.1 NC_001798.1 + 59799 0.66 0.646057
Target:  5'- aCcCGGGCCUGgCCCUCGAggccuUCUUc -3'
miRNA:   3'- aGcGCCCGGACgGGGGGCUacu--AGAG- -5'
5151 3' -62.1 NC_001798.1 + 61858 0.7 0.396124
Target:  5'- aCGCGGGCCgccgGCCCagCCCGgcGGccccCUCg -3'
miRNA:   3'- aGCGCCCGGa---CGGG--GGGCuaCUa---GAG- -5'
5151 3' -62.1 NC_001798.1 + 69326 0.69 0.464607
Target:  5'- cCGCGcGCCggGCuCCCCUGAgGAUCUUg -3'
miRNA:   3'- aGCGCcCGGa-CG-GGGGGCUaCUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 74631 0.66 0.65392
Target:  5'- cUG-GGGCCgaccgGCCCCCCGAggccccccggggGGcCUCg -3'
miRNA:   3'- aGCgCCCGGa----CGGGGGGCUa-----------CUaGAG- -5'
5151 3' -62.1 NC_001798.1 + 76608 0.66 0.665696
Target:  5'- -gGCGGG-CUGUCCCCCGAg------ -3'
miRNA:   3'- agCGCCCgGACGGGGGGCUacuagag -5'
5151 3' -62.1 NC_001798.1 + 80842 0.71 0.380045
Target:  5'- aCGUGGGCCgucgGCCUCCUccacaccGAUCUCa -3'
miRNA:   3'- aGCGCCCGGa---CGGGGGGcua----CUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 82213 0.68 0.538765
Target:  5'- cUC-CGGGCCuUGCCCCCCc--GAcCUCc -3'
miRNA:   3'- -AGcGCCCGG-ACGGGGGGcuaCUaGAG- -5'
5151 3' -62.1 NC_001798.1 + 87972 0.66 0.645074
Target:  5'- cUUGCGGGgCUuggacgcGCCUCCCGGggGGUCg- -3'
miRNA:   3'- -AGCGCCCgGA-------CGGGGGGCUa-CUAGag -5'
5151 3' -62.1 NC_001798.1 + 90083 0.67 0.548341
Target:  5'- aCGgGGGCCggcagGCCCCUgGAggcgaGAUCg- -3'
miRNA:   3'- aGCgCCCGGa----CGGGGGgCUa----CUAGag -5'
5151 3' -62.1 NC_001798.1 + 92131 0.66 0.626378
Target:  5'- aCGCGcGGCCUcccccGUcugCCCCCGGUcGUCUUg -3'
miRNA:   3'- aGCGC-CCGGA-----CG---GGGGGCUAcUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 94191 0.76 0.188298
Target:  5'- cUGCGGGCCgUGCCCCCUGcUGcagCUCc -3'
miRNA:   3'- aGCGCCCGG-ACGGGGGGCuACua-GAG- -5'
5151 3' -62.1 NC_001798.1 + 95017 0.66 0.606714
Target:  5'- gCGCGGGCCUggaggccgggGCCCgcgcgCUGAUGGaCUCc -3'
miRNA:   3'- aGCGCCCGGA----------CGGGg----GGCUACUaGAG- -5'
5151 3' -62.1 NC_001798.1 + 112255 0.67 0.557971
Target:  5'- uUUG-GGGCCUGUCCCCCGGa------ -3'
miRNA:   3'- -AGCgCCCGGACGGGGGGCUacuagag -5'
5151 3' -62.1 NC_001798.1 + 120221 0.69 0.459254
Target:  5'- cCcCGGGCCguugGCCCCCgccgaggccaggaugCGGUGcAUCUCg -3'
miRNA:   3'- aGcGCCCGGa---CGGGGG---------------GCUAC-UAGAG- -5'
5151 3' -62.1 NC_001798.1 + 120650 1.08 0.000964
Target:  5'- cUCGCGGGCCUGCCCCCCGAUGAUCUCc -3'
miRNA:   3'- -AGCGCCCGGACGGGGGGCUACUAGAG- -5'
5151 3' -62.1 NC_001798.1 + 124085 0.67 0.577366
Target:  5'- -gGCGGcGCCUGCgCCCCGAcGGc--- -3'
miRNA:   3'- agCGCC-CGGACGgGGGGCUaCUagag -5'
5151 3' -62.1 NC_001798.1 + 133464 0.69 0.468194
Target:  5'- gCGCGuGGCCgacgcccugagcggcUGCCCCCCGcgcgGGUC-Cg -3'
miRNA:   3'- aGCGC-CCGG---------------ACGGGGGGCua--CUAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.