miRNA: 3'- aGCGCCCGGa--CGGgGGgCuaCUAGAg -5'
miRNA: 3'- aGCGCCCG----GACG-GGGGGCUa-----------CUAGAG- -5'
miRNA: 3'- agCGCCCGga--------CG-GGGGGCUacUAGAG- -5'
miRNA: 3'- aGCGCCCgGACGG-GGGGCuaCUagag -5'
miRNA: 3'- agCGCCCgGACGGGGGGCUacuagag -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5151 | 3' | -62.1 | NC_001798.1 | + | 28820 | 0.67 | 0.577366 |
|
Target: 5'- cCGCGGGCCcggGCCgUCgGgcGGUCUa -3' miRNA: 3'- aGCGCCCGGa--CGGgGGgCuaCUAGAg -5' |
|||||||
| 5151 | 3' | -62.1 | NC_001798.1 | + | 11638 | 0.67 | 0.585167 |
|
Target: 5'- gCGCGGGCguccCUGUgUCCCCGGgggcgggggucgGGUCUCg -3' miRNA: 3'- aGCGCCCG----GACG-GGGGGCUa-----------CUAGAG- -5' |
|||||||
| 5151 | 3' | -62.1 | NC_001798.1 | + | 25713 | 0.67 | 0.58712 |
|
Target: 5'- -gGCGGGCaacuggaccgGCgCCCCCGAc-GUCUCg -3' miRNA: 3'- agCGCCCGga--------CG-GGGGGCUacUAGAG- -5' |
|||||||
| 5151 | 3' | -62.1 | NC_001798.1 | + | 178 | 0.67 | 0.58712 |
|
Target: 5'- cCGCGGGgCUGCCuUCCCGcgGGc--- -3' miRNA: 3'- aGCGCCCgGACGG-GGGGCuaCUagag -5' |
|||||||
| 5151 | 3' | -62.1 | NC_001798.1 | + | 76608 | 0.66 | 0.665696 |
|
Target: 5'- -gGCGGG-CUGUCCCCCGAg------ -3' miRNA: 3'- agCGCCCgGACGGGGGGCUacuagag -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home