miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5154 5' -52.3 NC_001798.1 + 86095 0.66 0.981721
Target:  5'- -cCCGGCuGCgCGCCgCCGcGGACGCc -3'
miRNA:   3'- caGGUCGuUGaGCGGaGGCaUUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 76686 0.66 0.979526
Target:  5'- --aCGGCGgaGCUCG-CUCCGgaGGCGCg -3'
miRNA:   3'- cagGUCGU--UGAGCgGAGGCauUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 98609 0.66 0.979526
Target:  5'- -cCCGGCGGCcccccgCGCCUCgGgcGGCGu -3'
miRNA:   3'- caGGUCGUUGa-----GCGGAGgCauUUGUg -5'
5154 5' -52.3 NC_001798.1 + 99880 0.66 0.979526
Target:  5'- -cUCAGCAacacGCUCGCCgagCUGUAcgUGCg -3'
miRNA:   3'- caGGUCGU----UGAGCGGa--GGCAUuuGUG- -5'
5154 5' -52.3 NC_001798.1 + 72256 0.66 0.979296
Target:  5'- gGUCCAGCugcCUCccccccaGCCUCCcgagGUGGGCAg -3'
miRNA:   3'- -CAGGUCGuu-GAG-------CGGAGG----CAUUUGUg -5'
5154 5' -52.3 NC_001798.1 + 138949 0.66 0.978118
Target:  5'- aGUCCAGCAGCgUCGuCCUgagCGUgcaucgccacgugucGAACACc -3'
miRNA:   3'- -CAGGUCGUUG-AGC-GGAg--GCA---------------UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 36118 0.66 0.97714
Target:  5'- -cCCGGCugcguCUCGCCgcgaucccgCCGgugGGGCGCg -3'
miRNA:   3'- caGGUCGuu---GAGCGGa--------GGCa--UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 99976 0.66 0.97714
Target:  5'- -cCCAGCGccaaCGCgUCCGUgGAGCGCa -3'
miRNA:   3'- caGGUCGUuga-GCGgAGGCA-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 31878 0.66 0.97714
Target:  5'- --gCGGCGGCcCGCCcCCGgaagAGGCGCg -3'
miRNA:   3'- cagGUCGUUGaGCGGaGGCa---UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 87964 0.66 0.975614
Target:  5'- -aCCAGCAGCUugcggggcuuggacgCGCCUCCcgggggGUcgGCAUg -3'
miRNA:   3'- caGGUCGUUGA---------------GCGGAGG------CAuuUGUG- -5'
5154 5' -52.3 NC_001798.1 + 121117 0.66 0.974556
Target:  5'- uUCCGGCAccgggaaggGCUCGCaccgCCGgccgggccaUGAACGCg -3'
miRNA:   3'- cAGGUCGU---------UGAGCGga--GGC---------AUUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 90680 0.67 0.965536
Target:  5'- -cCCGGCGACUCGCgCagggCCGccgccAGGCGCu -3'
miRNA:   3'- caGGUCGUUGAGCG-Ga---GGCa----UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 124197 0.67 0.962084
Target:  5'- -cCCAGCGcaccCUgGCCgUCCGgggGGACGCg -3'
miRNA:   3'- caGGUCGUu---GAgCGG-AGGCa--UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 111545 0.67 0.962084
Target:  5'- cUCCAGCGcccGgUCGCCggCGUaGAACACc -3'
miRNA:   3'- cAGGUCGU---UgAGCGGagGCA-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 109974 0.67 0.962084
Target:  5'- -aCCcGCGGCgUgGCCUCCGUucuCACg -3'
miRNA:   3'- caGGuCGUUG-AgCGGAGGCAuuuGUG- -5'
5154 5' -52.3 NC_001798.1 + 59669 0.67 0.962084
Target:  5'- ---gGGCGACUCGgCUCgCGUGGGgGCg -3'
miRNA:   3'- caggUCGUUGAGCgGAG-GCAUUUgUG- -5'
5154 5' -52.3 NC_001798.1 + 41367 0.67 0.958399
Target:  5'- -cCCGGCGGCUcauggCGCCggggauggCCGggagGGACACg -3'
miRNA:   3'- caGGUCGUUGA-----GCGGa-------GGCa---UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 95900 0.67 0.954476
Target:  5'- -aCgGGCu-CUCGCCUCCuuGUGGugGCg -3'
miRNA:   3'- caGgUCGuuGAGCGGAGG--CAUUugUG- -5'
5154 5' -52.3 NC_001798.1 + 24411 0.68 0.950309
Target:  5'- cGUCggCGGCGGCgUCGCCggCCGacGAGCGCg -3'
miRNA:   3'- -CAG--GUCGUUG-AGCGGa-GGCa-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 3268 0.68 0.945896
Target:  5'- -gCCGGCGggcaccgcgcGCUCGUCggCCGgcGACGCc -3'
miRNA:   3'- caGGUCGU----------UGAGCGGa-GGCauUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.