Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5154 | 5' | -52.3 | NC_001798.1 | + | 86095 | 0.66 | 0.981721 |
Target: 5'- -cCCGGCuGCgCGCCgCCGcGGACGCc -3' miRNA: 3'- caGGUCGuUGaGCGGaGGCaUUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 76686 | 0.66 | 0.979526 |
Target: 5'- --aCGGCGgaGCUCG-CUCCGgaGGCGCg -3' miRNA: 3'- cagGUCGU--UGAGCgGAGGCauUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 99880 | 0.66 | 0.979526 |
Target: 5'- -cUCAGCAacacGCUCGCCgagCUGUAcgUGCg -3' miRNA: 3'- caGGUCGU----UGAGCGGa--GGCAUuuGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 98609 | 0.66 | 0.979526 |
Target: 5'- -cCCGGCGGCcccccgCGCCUCgGgcGGCGu -3' miRNA: 3'- caGGUCGUUGa-----GCGGAGgCauUUGUg -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 72256 | 0.66 | 0.979296 |
Target: 5'- gGUCCAGCugcCUCccccccaGCCUCCcgagGUGGGCAg -3' miRNA: 3'- -CAGGUCGuu-GAG-------CGGAGG----CAUUUGUg -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 138949 | 0.66 | 0.978118 |
Target: 5'- aGUCCAGCAGCgUCGuCCUgagCGUgcaucgccacgugucGAACACc -3' miRNA: 3'- -CAGGUCGUUG-AGC-GGAg--GCA---------------UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 36118 | 0.66 | 0.97714 |
Target: 5'- -cCCGGCugcguCUCGCCgcgaucccgCCGgugGGGCGCg -3' miRNA: 3'- caGGUCGuu---GAGCGGa--------GGCa--UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 99976 | 0.66 | 0.97714 |
Target: 5'- -cCCAGCGccaaCGCgUCCGUgGAGCGCa -3' miRNA: 3'- caGGUCGUuga-GCGgAGGCA-UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 31878 | 0.66 | 0.97714 |
Target: 5'- --gCGGCGGCcCGCCcCCGgaagAGGCGCg -3' miRNA: 3'- cagGUCGUUGaGCGGaGGCa---UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 87964 | 0.66 | 0.975614 |
Target: 5'- -aCCAGCAGCUugcggggcuuggacgCGCCUCCcgggggGUcgGCAUg -3' miRNA: 3'- caGGUCGUUGA---------------GCGGAGG------CAuuUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 121117 | 0.66 | 0.974556 |
Target: 5'- uUCCGGCAccgggaaggGCUCGCaccgCCGgccgggccaUGAACGCg -3' miRNA: 3'- cAGGUCGU---------UGAGCGga--GGC---------AUUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 90680 | 0.67 | 0.965536 |
Target: 5'- -cCCGGCGACUCGCgCagggCCGccgccAGGCGCu -3' miRNA: 3'- caGGUCGUUGAGCG-Ga---GGCa----UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 124197 | 0.67 | 0.962084 |
Target: 5'- -cCCAGCGcaccCUgGCCgUCCGgggGGACGCg -3' miRNA: 3'- caGGUCGUu---GAgCGG-AGGCa--UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 111545 | 0.67 | 0.962084 |
Target: 5'- cUCCAGCGcccGgUCGCCggCGUaGAACACc -3' miRNA: 3'- cAGGUCGU---UgAGCGGagGCA-UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 109974 | 0.67 | 0.962084 |
Target: 5'- -aCCcGCGGCgUgGCCUCCGUucuCACg -3' miRNA: 3'- caGGuCGUUG-AgCGGAGGCAuuuGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 59669 | 0.67 | 0.962084 |
Target: 5'- ---gGGCGACUCGgCUCgCGUGGGgGCg -3' miRNA: 3'- caggUCGUUGAGCgGAG-GCAUUUgUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 41367 | 0.67 | 0.958399 |
Target: 5'- -cCCGGCGGCUcauggCGCCggggauggCCGggagGGACACg -3' miRNA: 3'- caGGUCGUUGA-----GCGGa-------GGCa---UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 95900 | 0.67 | 0.954476 |
Target: 5'- -aCgGGCu-CUCGCCUCCuuGUGGugGCg -3' miRNA: 3'- caGgUCGuuGAGCGGAGG--CAUUugUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 24411 | 0.68 | 0.950309 |
Target: 5'- cGUCggCGGCGGCgUCGCCggCCGacGAGCGCg -3' miRNA: 3'- -CAG--GUCGUUG-AGCGGa-GGCa-UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 3268 | 0.68 | 0.945896 |
Target: 5'- -gCCGGCGggcaccgcgcGCUCGUCggCCGgcGACGCc -3' miRNA: 3'- caGGUCGU----------UGAGCGGa-GGCauUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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