Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 116522 | 0.68 | 0.810852 |
|
Target: 5'- cGGGGGCgcug-CUgCACCgcGGGGgUCCg -3' miRNA: 3'- -CCCCUGacuaaGA-GUGGa-CCCCgAGG- -5' |
|||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 118372 | 1.13 | 0.001524 |
|
Target: 5'- gGGGGACUGAUUCUCACCUGGGGCUCCu -3' miRNA: 3'- -CCCCUGACUAAGAGUGGACCCCGAGG- -5' |
|||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 141460 | 0.69 | 0.765664 |
|
Target: 5'- cGGGGcugcgagcuGCUGAccggCUCGCCgcgcggGGGGCugaugUCCg -3' miRNA: 3'- -CCCC---------UGACUaa--GAGUGGa-----CCCCG-----AGG- -5' |
|||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 144585 | 0.67 | 0.867252 |
|
Target: 5'- cGGGcGGCUGGg--UgGCgaGGGGCUUCg -3' miRNA: 3'- -CCC-CUGACUaagAgUGgaCCCCGAGG- -5' |
|||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 150597 | 0.66 | 0.900844 |
|
Target: 5'- cGGGGgagagucGCUGAUgacUAUggGGGGCUCCu -3' miRNA: 3'- -CCCC-------UGACUAagaGUGgaCCCCGAGG- -5' |
|||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 150640 | 0.75 | 0.451763 |
|
Target: 5'- cGGGGCUG--UCUCGCggGGGGCgUCCu -3' miRNA: 3'- cCCCUGACuaAGAGUGgaCCCCG-AGG- -5' |
|||||||
| 5155 | 5' | -56.3 | NC_001798.1 | + | 151592 | 0.66 | 0.913591 |
|
Target: 5'- uGGGGCUGcccuggcgCUCgGCCgGGGGCcgggCCg -3' miRNA: 3'- cCCCUGACuaa-----GAG-UGGaCCCCGa---GG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home