miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 42829 0.68 0.984647
Target:  5'- gGGCCGCGGGaaaCAACaGCUgaacCGCc -3'
miRNA:   3'- aCCGGUGCCUguaGUUGaUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 77721 0.68 0.984647
Target:  5'- gGGCCGCcGGCGUCGAg-GCgg-CGCu -3'
miRNA:   3'- aCCGGUGcCUGUAGUUgaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 106175 0.68 0.982703
Target:  5'- cGGCCGCGGugAUguugcCGGagauCUUUUGCg -3'
miRNA:   3'- aCCGGUGCCugUA-----GUUgau-GAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 79744 0.68 0.982703
Target:  5'- cGGUCACGGcCAUguACgUGCUgaccgUCGUg -3'
miRNA:   3'- aCCGGUGCCuGUAguUG-AUGAa----AGCG- -5'
5156 5' -49.9 NC_001798.1 + 73971 0.68 0.982703
Target:  5'- cGGCCGCGGGC-UCcgGGCcGCcg-CGCa -3'
miRNA:   3'- aCCGGUGCCUGuAG--UUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 83348 0.68 0.982499
Target:  5'- cGGCCGCGG-CGUCGcccgcgaacauagGCUGCggg-GCg -3'
miRNA:   3'- aCCGGUGCCuGUAGU-------------UGAUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 97251 0.68 0.989492
Target:  5'- gGGCgGCGGGCGg-AGC-ACUUcgaUCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUUGaUGAA---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 79605 0.68 0.989492
Target:  5'- uUGGCCcCGGACGgaacgCcGCUGCagUaCGCg -3'
miRNA:   3'- -ACCGGuGCCUGUa----GuUGAUGaaA-GCG- -5'
5156 5' -49.9 NC_001798.1 + 41875 0.68 0.989492
Target:  5'- cGGCCGgGGA--UCAGCUGCa---GCa -3'
miRNA:   3'- aCCGGUgCCUguAGUUGAUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 138115 0.68 0.990035
Target:  5'- uUGaCCACGGcCGUCugaaacgccuggcgaAGCUGCUgcggUCGCg -3'
miRNA:   3'- -ACcGGUGCCuGUAG---------------UUGAUGAa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 136701 0.68 0.989492
Target:  5'- gGGCCAUguaccagugGGGCAg-GACUGCUcgUCGUc -3'
miRNA:   3'- aCCGGUG---------CCUGUagUUGAUGAa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 118927 0.68 0.989492
Target:  5'- aGGCgACGGACGUgCGcCUGgagUCGCu -3'
miRNA:   3'- aCCGgUGCCUGUA-GUuGAUgaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 98792 0.68 0.989492
Target:  5'- cGGCCACGc----CAGCUGCgcgCGCa -3'
miRNA:   3'- aCCGGUGCcuguaGUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 84947 0.68 0.989492
Target:  5'- gGGUCugGGACcgCAGCg-----CGCa -3'
miRNA:   3'- aCCGGugCCUGuaGUUGaugaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 83967 0.68 0.989492
Target:  5'- cGGCgACGGGCGagGGcCUGCUcggcggCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUU-GAUGAaa----GCG- -5'
5156 5' -49.9 NC_001798.1 + 54806 0.68 0.989492
Target:  5'- aUGcCCGCGGGCGUCGG--GCUUggCGCc -3'
miRNA:   3'- -ACcGGUGCCUGUAGUUgaUGAAa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 122475 0.67 0.993996
Target:  5'- cGGCC-CaGACGgc-GCUGCUgcgUCGCu -3'
miRNA:   3'- aCCGGuGcCUGUaguUGAUGAa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 39823 0.67 0.994834
Target:  5'- gGGUgGCGGAuCGUCGGCUccccGCcg-CGCu -3'
miRNA:   3'- aCCGgUGCCU-GUAGUUGA----UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 28594 0.67 0.994834
Target:  5'- gUGGCCugGGAgA-CGGCcGCg--CGCc -3'
miRNA:   3'- -ACCGGugCCUgUaGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 97643 0.67 0.993996
Target:  5'- -cGCCGCGGACGUgcgggagcgcCGGCgGCUguaCGCg -3'
miRNA:   3'- acCGGUGCCUGUA----------GUUGaUGAaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.