miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 154397 0.68 0.854079
Target:  5'- gGGgCGCGAaggCgggcgGCGGCGGCGGGCggGCGg -3'
miRNA:   3'- -UCgGCGCUaa-G-----UGCCGUUGCUCG--UGC- -5'
5157 3' -55.4 NC_001798.1 + 154125 0.67 0.883695
Target:  5'- cGGCgGCGGggacCcCGGCGGCGGGaCAUGg -3'
miRNA:   3'- -UCGgCGCUaa--GuGCCGUUGCUC-GUGC- -5'
5157 3' -55.4 NC_001798.1 + 154048 0.66 0.932024
Target:  5'- cGCCGgGGcgcggCACGGCuggAGCGccggGGCGCGg -3'
miRNA:   3'- uCGGCgCUaa---GUGCCG---UUGC----UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 153803 0.7 0.76701
Target:  5'- cGGCgGCGGggggCagGCGGCGGCaGGCGCGg -3'
miRNA:   3'- -UCGgCGCUaa--G--UGCCGUUGcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 153228 0.67 0.875893
Target:  5'- cGGCC-CGGgccCGCGGCGGCGGaggacccGCGCGc -3'
miRNA:   3'- -UCGGcGCUaa-GUGCCGUUGCU-------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 153044 0.66 0.932024
Target:  5'- cGGCgCGCGGUUgGcCGGCGccgcccccugggGCGGGCggaGCGg -3'
miRNA:   3'- -UCG-GCGCUAAgU-GCCGU------------UGCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 150392 0.71 0.722398
Target:  5'- cGGCCGCGuccgcgcUCgcagacaccacggggGCGGCGGCG-GCGCGg -3'
miRNA:   3'- -UCGGCGCua-----AG---------------UGCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 150348 0.7 0.753661
Target:  5'- gGGCgCGCGGUgcgcguccaccggCACGGCGgGCG-GCGCGg -3'
miRNA:   3'- -UCG-GCGCUAa------------GUGCCGU-UGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 150180 0.71 0.698412
Target:  5'- cGCCGCccccucCGCGGCGugGGGgGCGg -3'
miRNA:   3'- uCGGCGcuaa--GUGCCGUugCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 149973 0.68 0.864831
Target:  5'- cGCCGaCGGgggCGCGGCGcccgcggacgccgggGCGAGCGg- -3'
miRNA:   3'- uCGGC-GCUaa-GUGCCGU---------------UGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 149240 0.7 0.72833
Target:  5'- uGGcCCGCGGgggcgUCGcCGGCcggcGCGGGCGCGc -3'
miRNA:   3'- -UC-GGCGCUa----AGU-GCCGu---UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 145799 0.74 0.545844
Target:  5'- gAGCgCGCGG---GCGGCAgaaacGCGGGCGCGg -3'
miRNA:   3'- -UCG-GCGCUaagUGCCGU-----UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 143766 0.67 0.897183
Target:  5'- gGGCCugaucGCG-UUCugGGCAugG-GCGCc -3'
miRNA:   3'- -UCGG-----CGCuAAGugCCGUugCuCGUGc -5'
5157 3' -55.4 NC_001798.1 + 143666 0.75 0.448854
Target:  5'- aGGuaGCGAUUCGCGGCGAgGAaaugcugGCACGu -3'
miRNA:   3'- -UCggCGCUAAGUGCCGUUgCU-------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 142177 0.72 0.627061
Target:  5'- cGCgCGCGGUUCugacGCGGgGuCGAGCGCGc -3'
miRNA:   3'- uCG-GCGCUAAG----UGCCgUuGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 139938 0.69 0.803769
Target:  5'- gGGCCcugGCGGcgCACGGgGGCGAagacGCGCGa -3'
miRNA:   3'- -UCGG---CGCUaaGUGCCgUUGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 137177 0.66 0.932024
Target:  5'- uGGUCGCGGUaaacCGCGGCuGGCGAuCGCu -3'
miRNA:   3'- -UCGGCGCUAa---GUGCCG-UUGCUcGUGc -5'
5157 3' -55.4 NC_001798.1 + 135798 0.67 0.903582
Target:  5'- aGGCCGUGug-CGCGGCccggggcgucAugGAGgACGc -3'
miRNA:   3'- -UCGGCGCuaaGUGCCG----------UugCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 135715 0.67 0.903582
Target:  5'- gGGCCGCGuacgCcCGGCGGcCGAgguuauGCGCGa -3'
miRNA:   3'- -UCGGCGCuaa-GuGCCGUU-GCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 134675 0.7 0.72833
Target:  5'- cGCaGCGggUCACGGCG-CGGGUGCu -3'
miRNA:   3'- uCGgCGCuaAGUGCCGUuGCUCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.