Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5158 | 3' | -65.4 | NC_001798.1 | + | 154539 | 0.68 | 0.399105 |
Target: 5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3' miRNA: 3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 154438 | 0.77 | 0.088166 |
Target: 5'- cAGCCCCGCGCGcccccuuccccgUCCCUCcCCCGGa- -3' miRNA: 3'- cUCGGGGCGCGCa-----------AGGGAG-GGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 152646 | 0.66 | 0.483224 |
Target: 5'- -cGCCCCGCcgGCGcggCCCUgaguggugcccgcCCCCGGgGa -3' miRNA: 3'- cuCGGGGCG--CGCaa-GGGA-------------GGGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 152105 | 0.69 | 0.331254 |
Target: 5'- cGGCCCCGUcaaGCGUcCCCgcCCCCGaGCc -3' miRNA: 3'- cUCGGGGCG---CGCAaGGGa-GGGGC-CGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 151858 | 0.7 | 0.264495 |
Target: 5'- gGAcCCCCGCGcCGUgucccccgugucccUCCCUcaCCCCGGCc -3' miRNA: 3'- -CUcGGGGCGC-GCA--------------AGGGA--GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 150699 | 0.69 | 0.310605 |
Target: 5'- -cGCgCCUGCGCGcgCCCcCCgCCGGCc -3' miRNA: 3'- cuCG-GGGCGCGCaaGGGaGG-GGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 150231 | 0.67 | 0.423615 |
Target: 5'- gGGGaCCCCGgGUccUCCCUCcgcgCCCGGCc -3' miRNA: 3'- -CUC-GGGGCgCGcaAGGGAG----GGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 150046 | 0.68 | 0.399105 |
Target: 5'- gGGGCCCgGCGCGgcgccgCCCU-CuuGGCc -3' miRNA: 3'- -CUCGGGgCGCGCaa----GGGAgGggCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 149694 | 0.67 | 0.440448 |
Target: 5'- -cGCCCuCGCGUGgcgCgUCUUCCUGGCAc -3' miRNA: 3'- cuCGGG-GCGCGCaa-G-GGAGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147255 | 0.66 | 0.510379 |
Target: 5'- nGGCCgCGCcggcggcguuuccGCGUuccguuucuucUCCCUCCCgGGCc -3' miRNA: 3'- cUCGGgGCG-------------CGCA-----------AGGGAGGGgCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147219 | 0.69 | 0.33055 |
Target: 5'- cGGGCCCCcggcggaGCGCGggggCCCcggggCCCCGGg- -3' miRNA: 3'- -CUCGGGG-------CGCGCaa--GGGa----GGGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147178 | 0.67 | 0.415345 |
Target: 5'- cGGCgCCGgGCGgaaggcgUCCCcCgCCCGGCGg -3' miRNA: 3'- cUCGgGGCgCGCa------AGGGaG-GGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147064 | 0.67 | 0.440448 |
Target: 5'- gGGGcCCCCGCaccucgGCGgccgCCCcCUCCGGCGc -3' miRNA: 3'- -CUC-GGGGCG------CGCaa--GGGaGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 145506 | 0.71 | 0.243322 |
Target: 5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3' miRNA: 3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 145464 | 0.71 | 0.243322 |
Target: 5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3' miRNA: 3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 145422 | 0.71 | 0.243322 |
Target: 5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3' miRNA: 3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 145340 | 0.67 | 0.407174 |
Target: 5'- --cCCCCGCGUccucCCCUCCCCuGCGc -3' miRNA: 3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 145306 | 0.67 | 0.440448 |
Target: 5'- --cCCCCGCGUccucCCCUCCCCcGCGu -3' miRNA: 3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 144802 | 0.66 | 0.511295 |
Target: 5'- aGGGCCCgGCGCGUcgUUgUUUCCUGGg- -3' miRNA: 3'- -CUCGGGgCGCGCA--AGgGAGGGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 139005 | 0.67 | 0.423615 |
Target: 5'- --aCCCCG-GCGauaucgCCCUCCCgGGCGu -3' miRNA: 3'- cucGGGGCgCGCaa----GGGAGGGgCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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