miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 5' -55.5 NC_001798.1 + 59352 0.66 0.926913
Target:  5'- -gGGGUGGAaaggaCGGAGGCGCaaCCCGg -3'
miRNA:   3'- gaCCUACUUga---GCUUUCGCGggGGGU- -5'
5159 5' -55.5 NC_001798.1 + 122734 0.66 0.921443
Target:  5'- cCUGGA-GAACcugaugcgcgccUCGAGGGgacCGCCCCCg- -3'
miRNA:   3'- -GACCUaCUUG------------AGCUUUC---GCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 152303 0.66 0.921443
Target:  5'- -aGGGUaGACUCGAGacGGCGgCCCgCGg -3'
miRNA:   3'- gaCCUAcUUGAGCUU--UCGCgGGGgGU- -5'
5159 5' -55.5 NC_001798.1 + 84477 0.66 0.920883
Target:  5'- aUGcGcUGAACgagacccUCGAAcGCGUCCCCCGg -3'
miRNA:   3'- gAC-CuACUUG-------AGCUUuCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 81182 0.66 0.919755
Target:  5'- -cGGggGAGCUguuccCGGGacacccgguuuaccAGCGCCCCCUc -3'
miRNA:   3'- gaCCuaCUUGA-----GCUU--------------UCGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 85882 0.66 0.909781
Target:  5'- --uGAUGAACUgGAAGgacuGCGCCCgCCu -3'
miRNA:   3'- gacCUACUUGAgCUUU----CGCGGGgGGu -5'
5159 5' -55.5 NC_001798.1 + 63401 0.66 0.909781
Target:  5'- -cGGAUGAACccgaucUCGAuauccacCGCCUCCCGa -3'
miRNA:   3'- gaCCUACUUG------AGCUuuc----GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 54864 0.66 0.903591
Target:  5'- cCUGGcc-GGC-CGAAAGCcacGCCCCCCc -3'
miRNA:   3'- -GACCuacUUGaGCUUUCG---CGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 116065 0.66 0.903591
Target:  5'- gCUGGucucguacaucGUGAccuacCUCGggGGCGaCCuCCCCGa -3'
miRNA:   3'- -GACC-----------UACUu----GAGCuuUCGC-GG-GGGGU- -5'
5159 5' -55.5 NC_001798.1 + 31365 0.66 0.903591
Target:  5'- -cGGGUGGGCgaagacgccgCGGcggcggagggcAGGaCGCCCCCCGc -3'
miRNA:   3'- gaCCUACUUGa---------GCU-----------UUC-GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 151177 0.67 0.897164
Target:  5'- -gGGGUGGGCgacagggcgCGGAccguGUGuCCCCCCAg -3'
miRNA:   3'- gaCCUACUUGa--------GCUUu---CGC-GGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 82304 0.67 0.896509
Target:  5'- uUGGGUcguGCcCGGAGGCccgguugcccgccGCCCCCCAc -3'
miRNA:   3'- gACCUAcu-UGaGCUUUCG-------------CGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 76903 0.67 0.895191
Target:  5'- -gGGGUGGAC-CGAccuGGCcgaugccguccgggGCCCCCCc -3'
miRNA:   3'- gaCCUACUUGaGCUu--UCG--------------CGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 90485 0.67 0.890505
Target:  5'- -cGGGUGGugGCgUCGA---CGCCCCCCu -3'
miRNA:   3'- gaCCUACU--UG-AGCUuucGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 96156 0.67 0.890505
Target:  5'- -cGGGUGAcucGCcauggCGGccGCGCCCCCg- -3'
miRNA:   3'- gaCCUACU---UGa----GCUuuCGCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 147166 0.67 0.874323
Target:  5'- -cGGGUagccgcccggcgccGGGCg-GAAGGCGUCCCCCGc -3'
miRNA:   3'- gaCCUA--------------CUUGagCUUUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 99062 0.67 0.869166
Target:  5'- aUGGGgauAUUCGAGGaccGCGCCCCCg- -3'
miRNA:   3'- gACCUacuUGAGCUUU---CGCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 123866 0.67 0.869166
Target:  5'- gUGGcccacGAGCUCGAcGGCGCCUaccugguaCCCAc -3'
miRNA:   3'- gACCua---CUUGAGCUuUCGCGGG--------GGGU- -5'
5159 5' -55.5 NC_001798.1 + 2534 0.67 0.869166
Target:  5'- -cGGcgGGGCg-GggGGCGCggCCCCCGc -3'
miRNA:   3'- gaCCuaCUUGagCuuUCGCG--GGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 84195 0.67 0.861615
Target:  5'- uUGGucu-GCUCcgccguGAucGCGCCCCCCGg -3'
miRNA:   3'- gACCuacuUGAG------CUuuCGCGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.