miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 3' -52.6 NC_001798.1 + 154301 0.66 0.984654
Target:  5'- -uGCGGgcccucuuaaGGGGCGgcgGCAGgaCGGGGa -3'
miRNA:   3'- cuUGCU----------UCCCGCacaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 150088 0.72 0.788285
Target:  5'- gGGGCGAGGGGCGaGcGCGGggCGGcGGa -3'
miRNA:   3'- -CUUGCUUCCCGCaCaCGUCaaGCU-CC- -5'
5161 3' -52.6 NC_001798.1 + 149398 0.75 0.648302
Target:  5'- -cGCGggGGGCGUcggGUAG-UCGGGGg -3'
miRNA:   3'- cuUGCuuCCCGCAca-CGUCaAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 148382 0.69 0.912905
Target:  5'- gGAGgGgcGGGCGUGgcggGCAGgugugcgggCGGGGu -3'
miRNA:   3'- -CUUgCuuCCCGCACa---CGUCaa-------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 148275 0.69 0.912905
Target:  5'- gGAGgGgcGGGCGUGgcggGCAGgugugcgggCGGGGu -3'
miRNA:   3'- -CUUgCuuCCCGCACa---CGUCaa-------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 146040 0.66 0.976012
Target:  5'- --gUGggGGGCGUgGUGguGaaCGAuGGg -3'
miRNA:   3'- cuuGCuuCCCGCA-CACguCaaGCU-CC- -5'
5161 3' -52.6 NC_001798.1 + 144557 0.66 0.980692
Target:  5'- cGugGggGGGCGUucgaaAGggCGAGGa -3'
miRNA:   3'- cUugCuuCCCGCAcacg-UCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 138501 0.67 0.96751
Target:  5'- --cCGGAGGGCGUG-GCAcgcgacgaucUCGGGGc -3'
miRNA:   3'- cuuGCUUCCCGCACaCGUca--------AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 136872 0.66 0.984654
Target:  5'- cAGCG-AGGGCGUG-GCGuGgcucCGGGGa -3'
miRNA:   3'- cUUGCuUCCCGCACaCGU-Caa--GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 114329 1.1 0.005572
Target:  5'- uGAACGAAGGGCGUGUGCAGUUCGAGGu -3'
miRNA:   3'- -CUUGCUUCCCGCACACGUCAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 112828 0.73 0.77892
Target:  5'- uGGGCGucAGGGCGUG-GguGUgaauuUCGGGGg -3'
miRNA:   3'- -CUUGCu-UCCCGCACaCguCA-----AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 108850 0.66 0.984654
Target:  5'- uGGACGAcGGGCGggcugGC-GUUCGGGu -3'
miRNA:   3'- -CUUGCUuCCCGCaca--CGuCAAGCUCc -5'
5161 3' -52.6 NC_001798.1 + 101865 0.76 0.616064
Target:  5'- cGGCGGAgggggguGGGCGUGUGCGGgg-GAGGg -3'
miRNA:   3'- cUUGCUU-------CCCGCACACGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 100978 0.67 0.970551
Target:  5'- --cCGAccccgGGGGCGUGgGCGGggaGGGGg -3'
miRNA:   3'- cuuGCU-----UCCCGCACaCGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 100715 0.66 0.984654
Target:  5'- --uCGcGGGGC-UGUGCGcGUucuUCGAGGg -3'
miRNA:   3'- cuuGCuUCCCGcACACGU-CA---AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 98870 0.69 0.924435
Target:  5'- --cCGAcGGGCGccacggugGUGCAGUUUGAGc -3'
miRNA:   3'- cuuGCUuCCCGCa-------CACGUCAAGCUCc -5'
5161 3' -52.6 NC_001798.1 + 97531 0.68 0.957067
Target:  5'- aGGAgGggGGGCGgagGcGUGGcgCGGGGa -3'
miRNA:   3'- -CUUgCuuCCCGCa--CaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 97250 0.69 0.918793
Target:  5'- cGGGCGgcGGGCGga-GCAcuucgaucgcgcGUUCGGGGg -3'
miRNA:   3'- -CUUGCuuCCCGCacaCGU------------CAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 85821 0.66 0.980692
Target:  5'- uGACGGgggGGGGCGgggGCGGg-CGGGGg -3'
miRNA:   3'- cUUGCU---UCCCGCacaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 83644 0.73 0.759791
Target:  5'- gGAGCGGAGGGgaUGUGCGGcUCGcGGg -3'
miRNA:   3'- -CUUGCUUCCCgcACACGUCaAGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.