miRNA display CGI


Results 41 - 60 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 4952 0.72 0.311145
Target:  5'- cCUCGUcCGCCauCGCGAccuCGGCCCcGCgGCCCu -3'
miRNA:   3'- -GAGUA-GCGG--GCGCU---GCCGGG-CG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 25852 0.72 0.31591
Target:  5'- aUCGUCGUcaacgccgugcgcgCCGCGGacUGGCCCGCcgacggGCCCg -3'
miRNA:   3'- gAGUAGCG--------------GGCGCU--GCCGGGCG------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 150746 0.72 0.317968
Target:  5'- uCUCGgcacgaCGgCCGCGACGGCagggCCGCcCCCa -3'
miRNA:   3'- -GAGUa-----GCgGGCGCUGCCG----GGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 5381 0.72 0.324903
Target:  5'- gUCcgCGUCCGUGGCGGCggcccguuggUCGCGCCg -3'
miRNA:   3'- gAGuaGCGGGCGCUGCCG----------GGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 28352 0.72 0.324903
Target:  5'- ----gCGCCgGCGGCGGCCCcccGCGuCCCc -3'
miRNA:   3'- gaguaGCGGgCGCUGCCGGG---CGU-GGG- -5'
5161 5' -62.4 NC_001798.1 + 149237 0.72 0.324903
Target:  5'- -cCGUgGCCCGCGGgggcgucgcCGGCCggcgcgggCGCGCCCu -3'
miRNA:   3'- gaGUAgCGGGCGCU---------GCCGG--------GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 31862 0.72 0.324903
Target:  5'- -cCA-CGCCgcggaggggGCGGCGGCCCGCcCCCg -3'
miRNA:   3'- gaGUaGCGGg--------CGCUGCCGGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 61702 0.72 0.346378
Target:  5'- aUCcUgGCCCGCacGACGGCCCaGUGCCg -3'
miRNA:   3'- gAGuAgCGGGCG--CUGCCGGG-CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 3226 0.72 0.346378
Target:  5'- gCUCAggCGCCCcagGGCGGCgaGCACCCc -3'
miRNA:   3'- -GAGUa-GCGGGcg-CUGCCGggCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 23614 0.71 0.353759
Target:  5'- -----aGCCCGCccCGGCCCGgACCCc -3'
miRNA:   3'- gaguagCGGGCGcuGCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 77473 0.71 0.353759
Target:  5'- cCUCAUCGa-UGCcGCGGCCCGCGCg- -3'
miRNA:   3'- -GAGUAGCggGCGcUGCCGGGCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 92982 0.71 0.353759
Target:  5'- -cCGUgGCCCGCG-CGGCCgCcCACCUg -3'
miRNA:   3'- gaGUAgCGGGCGCuGCCGG-GcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 2106 0.71 0.353759
Target:  5'- ----cCGCCCccgGCG-CGGCCCGCGgCCa -3'
miRNA:   3'- gaguaGCGGG---CGCuGCCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 78818 0.71 0.36125
Target:  5'- -gCGcCGCCCgcgGCGACGGCCCcgGC-CCCu -3'
miRNA:   3'- gaGUaGCGGG---CGCUGCCGGG--CGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 25460 0.71 0.368851
Target:  5'- -gCGgcgCGCCCGCcgccuuCGGCCCGCugCg -3'
miRNA:   3'- gaGUa--GCGGGCGcu----GCCGGGCGugGg -5'
5161 5' -62.4 NC_001798.1 + 24475 0.71 0.368851
Target:  5'- gCUCGcCGCCCuGgGGCGccugaGCgCCGCGCCCg -3'
miRNA:   3'- -GAGUaGCGGG-CgCUGC-----CG-GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 2002 0.71 0.368851
Target:  5'- --aGUUGCCCGCccaGGCGGCCguggCGgGCCCg -3'
miRNA:   3'- gagUAGCGGGCG---CUGCCGG----GCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 124167 0.71 0.375785
Target:  5'- -gCGUCGcCCCGUGcaugugguccaauAUGGCCCagcGCACCCu -3'
miRNA:   3'- gaGUAGC-GGGCGC-------------UGCCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 30838 0.71 0.376561
Target:  5'- gCUCccuGUCGCUgGgGggacacACGGUCCGCGCCCu -3'
miRNA:   3'- -GAG---UAGCGGgCgC------UGCCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 93263 0.71 0.376561
Target:  5'- ----aCGCCCGC---GGCCCGCGCCg -3'
miRNA:   3'- gaguaGCGGGCGcugCCGGGCGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.