miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5162 3' -52.8 NC_001798.1 + 151602 0.7 0.886862
Target:  5'- -cUGGCGCuCGGCcgGgggccgGGCCGg -3'
miRNA:   3'- ccACCGCG-GCCGuaCauaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 150845 0.69 0.915348
Target:  5'- aGGgGGCGCCGGUcgGgucgcggcgGGCUGg -3'
miRNA:   3'- -CCaCCGCGGCCGuaCauaaua---UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 146122 0.67 0.949118
Target:  5'- uGGUGGCGgCGGCG-GUGgaa-AGCgGa -3'
miRNA:   3'- -CCACCGCgGCCGUaCAUaauaUCGgC- -5'
5162 3' -52.8 NC_001798.1 + 132600 0.68 0.929942
Target:  5'- uGGUGaGCGCCaGCGggca--GUGGCCGg -3'
miRNA:   3'- -CCAC-CGCGGcCGUacauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 128249 0.67 0.953301
Target:  5'- uGGaGGCgGCCGGCAUGguggaccgcgggcucGGCCGg -3'
miRNA:   3'- -CCaCCG-CGGCCGUACauaaua---------UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 125484 0.67 0.96444
Target:  5'- uGGUGGCGCUugGGCGUcgcg-GUGGCa- -3'
miRNA:   3'- -CCACCGCGG--CCGUAcauaaUAUCGgc -5'
5162 3' -52.8 NC_001798.1 + 124891 0.67 0.957247
Target:  5'- cGGUGGCGCgcUGGCGgaaGUGccgcacGGCCGu -3'
miRNA:   3'- -CCACCGCG--GCCGUa--CAUaaua--UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 124373 0.66 0.97074
Target:  5'- gGGUGGCGCCucuGCGUucugucaucGUAUaccAGCCGc -3'
miRNA:   3'- -CCACCGCGGc--CGUA---------CAUAauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 120775 0.67 0.963419
Target:  5'- cGUGGCGuuGGUGUGcGUcaccacccgcggcaUGUGGUCGu -3'
miRNA:   3'- cCACCGCggCCGUACaUA--------------AUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 117566 0.67 0.95082
Target:  5'- aGGUGccgcggcGCGCCGGCAUGgaccacgggcaggauGCCGu -3'
miRNA:   3'- -CCAC-------CGCGGCCGUACauaauau--------CGGC- -5'
5162 3' -52.8 NC_001798.1 + 115874 0.72 0.778298
Target:  5'- -aUGGCGCCGGCuacc---AUAGCCGc -3'
miRNA:   3'- ccACCGCGGCCGuacauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 113830 0.66 0.97357
Target:  5'- --aGGaCGCCGGCcgGUccUcgGGCCu -3'
miRNA:   3'- ccaCC-GCGGCCGuaCAuaAuaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 113656 0.68 0.926178
Target:  5'- gGGUGGCGgCGGCGgacugcuuuGCCGc -3'
miRNA:   3'- -CCACCGCgGCCGUacauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 113356 1.11 0.004327
Target:  5'- cGGUGGCGCCGGCAUGUAUUAUAGCCGc -3'
miRNA:   3'- -CCACCGCGGCCGUACAUAAUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 113317 0.81 0.327335
Target:  5'- uGGUGGcCGCgGGCAUGUAUUacggGUGGaCCGg -3'
miRNA:   3'- -CCACC-GCGgCCGUACAUAA----UAUC-GGC- -5'
5162 3' -52.8 NC_001798.1 + 112400 0.67 0.953301
Target:  5'- cGGUGGUGCagGGUG-GUGgcAUAGCUGa -3'
miRNA:   3'- -CCACCGCGg-CCGUaCAUaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 111307 0.69 0.910519
Target:  5'- cGUGGCGCUGG-AUGUAccgaccgacgAGCCGc -3'
miRNA:   3'- cCACCGCGGCCgUACAUaaua------UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 111000 0.69 0.893746
Target:  5'- --aGGCGCgCGGUAUGc---GUGGCCGc -3'
miRNA:   3'- ccaCCGCG-GCCGUACauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 104906 0.71 0.840823
Target:  5'- aGUGGCGCUGGCccacg-UAcAGCCGg -3'
miRNA:   3'- cCACCGCGGCCGuacauaAUaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 102504 0.71 0.849031
Target:  5'- cGGgccGGCGCCGGgGUGUccguaGGCCa -3'
miRNA:   3'- -CCa--CCGCGGCCgUACAuaauaUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.