miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 37187 0.74 0.548997
Target:  5'- gGCGcGCCAGGCGccgcgccgaacGACGGgc-GCGGCGc -3'
miRNA:   3'- -CGCuCGGUCCGU-----------UUGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2944 0.74 0.550011
Target:  5'- cGCGcAGCCAGGCGcgcaGGCGGggcgcgucggcguGCGGCGg -3'
miRNA:   3'- -CGC-UCGGUCCGU----UUGCCauu----------CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 69 0.74 0.559166
Target:  5'- gGCGGGCggcggcggCGGGCGGGCGGcaGGGCAGCc -3'
miRNA:   3'- -CGCUCG--------GUCCGUUUGCCa-UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 154407 0.74 0.559166
Target:  5'- gGCGGGCggcggcggCGGGCGGGCGGcaGGGCAGCc -3'
miRNA:   3'- -CGCUCG--------GUCCGUUUGCCa-UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 102540 0.74 0.568362
Target:  5'- cGCG-GCC-GGCAGgccgcacGCGGUcAGCGGCGg -3'
miRNA:   3'- -CGCuCGGuCCGUU-------UGCCAuUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 26882 0.74 0.569386
Target:  5'- nGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 2998 0.74 0.579652
Target:  5'- cGCGGGCCccGGGC--GCGGgggcGCGGCGg -3'
miRNA:   3'- -CGCUCGG--UCCGuuUGCCauu-CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 70228 0.74 0.579652
Target:  5'- aGCGAGCCggcGGGCAGcGCGGacGAGcCGGCGu -3'
miRNA:   3'- -CGCUCGG---UCCGUU-UGCCa-UUC-GUCGC- -5'
5165 3' -54.3 NC_001798.1 + 57389 0.74 0.589957
Target:  5'- cGCGAGCCguaccGGGCcAGCGGgucGUGGCGg -3'
miRNA:   3'- -CGCUCGG-----UCCGuUUGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 122821 0.73 0.610654
Target:  5'- gGCG-GCCAGG---GCGGUcggGGGCGGCGg -3'
miRNA:   3'- -CGCuCGGUCCguuUGCCA---UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 9056 0.73 0.621031
Target:  5'- gGCGAGCCAGGUGAcgaauUGGgaGGgGGCGu -3'
miRNA:   3'- -CGCUCGGUCCGUUu----GCCauUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 64723 0.73 0.621031
Target:  5'- cUGGGCCgAGGC-GGCGGUGGGCAugaGCGc -3'
miRNA:   3'- cGCUCGG-UCCGuUUGCCAUUCGU---CGC- -5'
5165 3' -54.3 NC_001798.1 + 23952 0.73 0.621031
Target:  5'- cCGAGCUGGGCGAcGCGGc--GCAGCa -3'
miRNA:   3'- cGCUCGGUCCGUU-UGCCauuCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 2483 0.73 0.641803
Target:  5'- gGCGGGCC-GGCGGgucagcgccGCGGggcGCGGCGg -3'
miRNA:   3'- -CGCUCGGuCCGUU---------UGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 153071 0.72 0.672881
Target:  5'- cUGGGgCGGGCgGAGCGGcgGGGCGGCGc -3'
miRNA:   3'- cGCUCgGUCCG-UUUGCCa-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 69281 0.72 0.683183
Target:  5'- gGCGGGUCAGGUGAuaGCGGggGGCGcCGg -3'
miRNA:   3'- -CGCUCGGUCCGUU--UGCCauUCGUcGC- -5'
5165 3' -54.3 NC_001798.1 + 6356 0.72 0.683183
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUCGc -5'
5165 3' -54.3 NC_001798.1 + 12324 0.72 0.683183
Target:  5'- aGCG-GCCGGGCAuaccgggaucgGACGGgucgAGGUGGCu -3'
miRNA:   3'- -CGCuCGGUCCGU-----------UUGCCa---UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 67702 0.72 0.693443
Target:  5'- gGCGGGCCcguGGgAGGCGGggUGGGCGGUa -3'
miRNA:   3'- -CGCUCGGu--CCgUUUGCC--AUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 105189 0.72 0.693443
Target:  5'- cGCGgcGGCgGGGCccGCGGUGGGCgacGGCGc -3'
miRNA:   3'- -CGC--UCGgUCCGuuUGCCAUUCG---UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.