miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 109103 1.08 0.000639
Target:  5'- gCUCGGCGCUGGACGCCCUCCGGCGGGu -3'
miRNA:   3'- -GAGCCGCGACCUGCGGGAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 80919 0.66 0.567199
Target:  5'- gUCGGCGCUcaucgccGaGCGCCCUcucgCCGaCGGGc -3'
miRNA:   3'- gAGCCGCGA-------CcUGCGGGA----GGCcGCCC- -5'
5169 3' -64.8 NC_001798.1 + 27544 0.66 0.566259
Target:  5'- -gCGGCGCgcgGGgggaggggcgGCGCCCgcgggggagcggCCGGCuccGGGg -3'
miRNA:   3'- gaGCCGCGa--CC----------UGCGGGa-----------GGCCG---CCC- -5'
5169 3' -64.8 NC_001798.1 + 73332 0.66 0.55876
Target:  5'- -cCGcGCGCcgucGACGCgC-CCGGCGGGc -3'
miRNA:   3'- gaGC-CGCGac--CUGCGgGaGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 102657 0.66 0.55876
Target:  5'- --aGGgGCcgGGGCGCCCgaugCCGaaaCGGGg -3'
miRNA:   3'- gagCCgCGa-CCUGCGGGa---GGCc--GCCC- -5'
5169 3' -64.8 NC_001798.1 + 80402 0.66 0.55876
Target:  5'- -gCGGCGgUGaGCGUCCUCgGGCGc- -3'
miRNA:   3'- gaGCCGCgACcUGCGGGAGgCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 4109 0.66 0.55876
Target:  5'- gCUCGGCcCUGGGCggGCUCggCCGGggcgccgccccCGGGg -3'
miRNA:   3'- -GAGCCGcGACCUG--CGGGa-GGCC-----------GCCC- -5'
5169 3' -64.8 NC_001798.1 + 39554 0.66 0.557824
Target:  5'- -gUGGCGCcgGGGcCGUCCgUCCGcgccgacGCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCU-GCGGG-AGGC-------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 66834 0.66 0.549425
Target:  5'- -cCGGUGCcGG-CGCCCaggCCGGgguuucCGGGg -3'
miRNA:   3'- gaGCCGCGaCCuGCGGGa--GGCC------GCCC- -5'
5169 3' -64.8 NC_001798.1 + 52364 0.66 0.568138
Target:  5'- --aGGCGCUGGGCGacaCCg-CGGCGc- -3'
miRNA:   3'- gagCCGCGACCUGCg--GGagGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 27944 0.66 0.568138
Target:  5'- -cCGGCGCcGGcCGCgCC-CCGGCGc- -3'
miRNA:   3'- gaGCCGCGaCCuGCG-GGaGGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 93503 0.66 0.568138
Target:  5'- --gGGCGCcccacGGCGCCCcucgUCGGCGGa -3'
miRNA:   3'- gagCCGCGac---CUGCGGGa---GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 36563 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36521 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 4615 0.66 0.577556
Target:  5'- uCUUGcGCGCcGu-CGCgCUCCGGgGGGg -3'
miRNA:   3'- -GAGC-CGCGaCcuGCGgGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 117279 0.66 0.577556
Target:  5'- uCUgGGCcaGCUccaGGugGCCCgCCacgaaacgGGCGGGg -3'
miRNA:   3'- -GAgCCG--CGA---CCugCGGGaGG--------CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 106001 0.66 0.577556
Target:  5'- -cUGGgGaggggGGGuCGCUCUCUGGUGGGg -3'
miRNA:   3'- gaGCCgCga---CCU-GCGGGAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 71186 0.66 0.577556
Target:  5'- gUCGGCGCUGGcCaucuuCCgUCCGGCc-- -3'
miRNA:   3'- gAGCCGCGACCuGc----GGgAGGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 2248 0.66 0.577556
Target:  5'- --aGGCgGC-GGGCGCgCCgCCGGgGGGc -3'
miRNA:   3'- gagCCG-CGaCCUGCG-GGaGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 2368 0.66 0.577556
Target:  5'- gCUCGGCcacggcccGCgGGGCGCaguaggCCUCCagGGCGGcGg -3'
miRNA:   3'- -GAGCCG--------CGaCCUGCG------GGAGG--CCGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.