miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 109103 1.08 0.000639
Target:  5'- gCUCGGCGCUGGACGCCCUCCGGCGGGu -3'
miRNA:   3'- -GAGCCGCGACCUGCGGGAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 60213 0.79 0.08222
Target:  5'- cCUgGGCGCUGGugcuggacgacGCGCCCUCCucGCGGGc -3'
miRNA:   3'- -GAgCCGCGACC-----------UGCGGGAGGc-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 134751 0.77 0.121811
Target:  5'- -cCGGCGCUGGuCGCCCucuUCCGGCa-- -3'
miRNA:   3'- gaGCCGCGACCuGCGGG---AGGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 52775 0.77 0.12786
Target:  5'- cCUCGGCGCcccGGGCGCCCg-UGaGCGGGa -3'
miRNA:   3'- -GAGCCGCGa--CCUGCGGGagGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 26187 0.75 0.151276
Target:  5'- -cCGGCGCUGGACGgCCgggCCGccgccucgggcGCGGGc -3'
miRNA:   3'- gaGCCGCGACCUGCgGGa--GGC-----------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 34984 0.75 0.162459
Target:  5'- --aGGUGCggGGGC-CCCUCCGGcCGGGg -3'
miRNA:   3'- gagCCGCGa-CCUGcGGGAGGCC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 97296 0.75 0.162459
Target:  5'- -gCGGCGCuggacauggUGGACGCCCUgaucaUCGGCGGc -3'
miRNA:   3'- gaGCCGCG---------ACCUGCGGGA-----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 154109 0.74 0.178524
Target:  5'- -cCGGCGCcggGGAC-CCCggCGGCGGGg -3'
miRNA:   3'- gaGCCGCGa--CCUGcGGGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 2610 0.74 0.178524
Target:  5'- --gGGCGCgGGGCGCCgC-CCGGCGGc -3'
miRNA:   3'- gagCCGCGaCCUGCGG-GaGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 102761 0.74 0.182756
Target:  5'- -gCGGCGCgGGaACGCUCg-CGGCGGGg -3'
miRNA:   3'- gaGCCGCGaCC-UGCGGGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 87975 0.74 0.182756
Target:  5'- -gCGGgGCuUGGACGCgCCUCCcGGgGGGu -3'
miRNA:   3'- gaGCCgCG-ACCUGCG-GGAGG-CCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 122084 0.73 0.205263
Target:  5'- -gCGGUGCUGGcGgGCCUggagccgcCCGGCGGGg -3'
miRNA:   3'- gaGCCGCGACC-UgCGGGa-------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 101801 0.73 0.216896
Target:  5'- cCUCcGCGCcGGGCGCCucggguugggguaagCUCgCGGCGGGg -3'
miRNA:   3'- -GAGcCGCGaCCUGCGG---------------GAG-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 86271 0.73 0.230131
Target:  5'- --gGGCGC-GGGCGCa--CCGGCGGGg -3'
miRNA:   3'- gagCCGCGaCCUGCGggaGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 98569 0.72 0.24077
Target:  5'- --gGGCGCUGGugGCCgCgguggcgUCGGCGGc -3'
miRNA:   3'- gagCCGCGACCugCGG-Ga------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 132203 0.72 0.24077
Target:  5'- uUCGGggaGCUGGaggcGCGCCUggCCGGCGGa -3'
miRNA:   3'- gAGCCg--CGACC----UGCGGGa-GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 25742 0.72 0.24569
Target:  5'- uCUCGGCGCUGGGCGCgcagggcgugcugCUgcugUCCacGCGGGa -3'
miRNA:   3'- -GAGCCGCGACCUGCG-------------GG----AGGc-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36398 0.72 0.263276
Target:  5'- -gCGGCGCcgGGGCcCCCcugCCGgGCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCUGcGGGa--GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 58550 0.72 0.263276
Target:  5'- gUUGGcCGCUcGGCGUCCUCCggggcguaucggGGCGGGg -3'
miRNA:   3'- gAGCC-GCGAcCUGCGGGAGG------------CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 122010 0.72 0.269164
Target:  5'- cCUCGGgGCUccgccaGGGCGCCCUgguccaccaggCCGucaGCGGGg -3'
miRNA:   3'- -GAGCCgCGA------CCUGCGGGA-----------GGC---CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.